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fix typo in changelog
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shenwei356 committed Dec 18, 2024
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4 changes: 2 additions & 2 deletions CHANGELOG.md
Original file line number Diff line number Diff line change
Expand Up @@ -11,13 +11,13 @@ This version is compatible with indexes created by LexicMap v0.4.0, but rebuildi
- **Change the default value of `--partitions` from 1024 to 4096, which increases the seed-matching speed at the cost of 2 GiB more memory occupation**.
For existing lexicmap indexes, just run `lexicmap utils reindex-seeds --partitions 4096` to re-create seed indexes.
- **Do not save seeds of low-complexity**.
- Fix high memory usage in writting seed data.
- Fix high memory usage in writing seed data.
- Change the default value of `-c/--chunks` from all available CPUs to the value of `-j/--threads`.
- Change the default value of `--max-open-files` from 512 to 1024.
- Add a new flag `--debug`.
- `lexicmap search`:
- **Improving chaining, pseudoalignment, and alignment for highly repetitive sequences**.
- **More accurate chainning score with better chaining of overlapped anchors, this produces more accurate results with `-n/--top-n-genomes`**:
- **More accurate chaining score with better chaining of overlapped anchors, this produces more accurate results with `-n/--top-n-genomes`**:
- Merging two overlapped non-gapped anchors into a longer one.
- For these with gaps, only the non-overlapped part of the second anchor is used to compute the weight.
- Using the score of the best chain (rather than the sum) for sorting genomes when using `-n`.
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4 changes: 2 additions & 2 deletions docs/content/releases/_index.md
Original file line number Diff line number Diff line change
Expand Up @@ -27,13 +27,13 @@ This version is compatible with indexes created by LexicMap v0.4.0, but rebuildi
- **Change the default value of `--partitions` from 1024 to 4096, which increases the seed-matching speed at the cost of 2 GiB more memory occupation**.
For existing lexicmap indexes, just run `lexicmap utils reindex-seeds --partitions 4096` to re-create seed indexes.
- **Do not save seeds of low-complexity**.
- Fix high memory usage in writting seed data.
- Fix high memory usage in writing seed data.
- Change the default value of `-c/--chunks` from all available CPUs to the value of `-j/--threads`.
- Change the default value of `--max-open-files` from 512 to 1024.
- Add a new flag `--debug`.
- `lexicmap search`:
- **Improving chaining, pseudoalignment, and alignment for highly repetitive sequences**.
- **More accurate chainning score with better chaining of overlapped anchors, this produces more accurate results with `-n/--top-n-genomes`**:
- **More accurate chaining score with better chaining of overlapped anchors, this produces more accurate results with `-n/--top-n-genomes`**:
- Merging two overlapped non-gapped anchors into a longer one.
- For these with gaps, only the non-overlapped part of the second anchor is used to compute the weight.
- Using the score of the best chain (rather than the sum) for sorting genomes when using `-n`.
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