Parallel multipleFamilyCalculations #6
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
|
Thank you for submitting this. I'll be reviewing this and working on some related fixes throughout this week. |
|
Just FYI, I was able to calculate her full dataset in just under 34 hours with this code. Previously, it ran for 10 days on our system before being cut off by our job scheduler. (we have a 10 day max runtime) |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
I changed 3 sapply to parSapply to try and help @klmartinez run her experiments on the U of A HPC. This allowed a small sample of her work to run in 5 minutes instead of 40.