Fixed bugs in specimen surface calculation #34
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| name: Python Package using Conda | |
| on: | |
| push: | |
| branches: | |
| - master | |
| jobs: | |
| build-linux: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| max-parallel: 5 | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v3 | |
| - name: Set up conda environment with Mambaforge | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| use-mamba: true | |
| python-version: '3.10' | |
| activate-environment: lsm-dev | |
| environment-file: environment-dev.yml | |
| miniforge-variant: Mambaforge | |
| - shell: bash -el {0} | |
| run: | | |
| cd lsmgridtrack/test | |
| coverage run -m pytest test_image.py test_kinematics.py test_kinematics2d.py test_postprocessing.py test_registration.py | |
| coverage xml -i | |
| coverage report -m | |
| - name: Upload coverage report | |
| uses: codecov/codecov-action@v3 |