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Add extra data for tutorial
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silkemaes committed Oct 25, 2024
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10 changes: 10 additions & 0 deletions data/paths_train_data.txt
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20211014_gridC_Mdot2e-8_v10_T_eps_model_2022-12-25h13-20-46/csfrac_smooth.out
20210527_gridC_Mdot5e-5_v22-5_T_eps_model_2022-12-27h10-44-23/csfrac_smooth.out
20211014_gridC_Mdot1e-7_v15_T_eps_model_2022-12-28h15-08-21/csfrac_smooth.out
20210527_gridC_Mdot2e-5_v17-5_T_eps_model_2023-01-16h16-20-07/csfrac_smooth.out
20211014_gridC_Mdot1e-7_v7-5_T_eps_model_2022-12-26h18-24-01/csfrac_smooth.out
20211015_gridC_Mdot1e-6_v20_T_eps_model_2022-12-28h21-05-09/csfrac_smooth.out
20211014_gridC_Mdot1e-8_v5_T_eps_model_2022-12-25h08-12-47/csfrac_smooth.out
20211018_gridC_Mdot5e-6_v22-5_T_eps_model_2022-12-27h03-01-50/csfrac_smooth.out
20210527_gridC_Mdot2e-5_v20_T_eps_model_2023-01-10h12-04-32/csfrac_smooth.out
20211014_gridC_Mdot5e-7_v15_T_eps_model_2022-12-23h16-12-23/csfrac_smooth.out
20211014_gridC_Mdot5e-8_v12-5_T_eps_model_2022-12-25h00-57-30/csfrac_smooth.out


4,045 changes: 4,045 additions & 0 deletions data/train/20210527_gridC_Mdot2e-5_v17-5_T_eps_model_2023-01-16h16-20-07/csfrac_smooth.out
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85 changes: 85 additions & 0 deletions .../train/20210527_gridC_Mdot2e-5_v17-5_T_eps_model_2023-01-16h16-20-07/csphyspar_smooth.out
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** PHYSICAL PARAMETERS **


RADIUS n(Htot) TEMP A_UV EFF RAD. EFF C K(PH) C K(IP) C K(AP) CO K(PH) CO K(IP) CO K(AP) DELTA_AUV
1.000E+014 2.576E+009 1.103E+003 6.406E+002 2.669E-281 0.000E+000 0.000E+000 0.000E+000 0.000E+000 0.000E+000 0.000E+000 9.609E+002
1.122E+014 2.046E+009 1.053E+003 5.709E+002 5.466E-251 5.955E-299 0.000E+000 0.000E+000 0.000E+000 0.000E+000 0.000E+000 1.031E+003
1.259E+014 1.625E+009 1.006E+003 5.088E+002 5.658E-224 3.923E-269 0.000E+000 0.000E+000 0.000E+000 0.000E+000 0.000E+000 1.093E+003
1.413E+014 1.291E+009 9.608E+002 4.535E+002 6.758E-200 8.779E-241 0.000E+000 0.000E+000 0.000E+000 0.000E+000 0.000E+000 1.148E+003
1.585E+014 1.026E+009 9.176E+002 4.042E+002 1.944E-178 1.224E-215 0.000E+000 0.000E+000 0.000E+000 0.000E+000 0.000E+000 1.197E+003
1.778E+014 8.146E+008 8.763E+002 3.602E+002 2.593E-159 9.025E-193 0.000E+000 0.000E+000 0.000E+000 0.000E+000 0.000E+000 1.241E+003
1.995E+014 6.471E+008 8.368E+002 3.211E+002 2.878E-142 1.039E-173 0.000E+000 0.000E+000 0.000E+000 0.000E+000 0.000E+000 1.280E+003
2.239E+014 5.140E+008 7.992E+002 2.861E+002 4.475E-127 1.049E-156 0.000E+000 0.000E+000 0.000E+000 0.000E+000 0.000E+000 1.315E+003
2.512E+014 4.083E+008 7.632E+002 2.550E+002 1.550E-113 2.502E-139 0.000E+000 0.000E+000 0.000E+000 0.000E+000 0.000E+000 1.346E+003
2.818E+014 3.243E+008 7.288E+002 2.273E+002 1.810E-101 8.025E-127 0.000E+000 0.000E+000 0.000E+000 0.000E+000 0.000E+000 1.374E+003
3.162E+014 2.576E+008 6.960E+002 2.026E+002 1.030E-090 2.882E-114 0.000E+000 0.000E+000 0.000E+000 0.000E+000 0.000E+000 1.399E+003
3.548E+014 2.046E+008 6.647E+002 1.805E+002 3.968E-081 2.098E-102 0.000E+000 0.000E+000 0.000E+000 0.000E+000 0.000E+000 1.421E+003
3.981E+014 1.625E+008 6.348E+002 1.609E+002 1.389E-072 7.240E-092 0.000E+000 0.000E+000 0.000E+000 0.000E+000 0.000E+000 1.441E+003
4.467E+014 1.291E+008 6.062E+002 1.434E+002 5.749E-065 2.514E-084 0.000E+000 0.000E+000 0.000E+000 0.000E+000 0.000E+000 1.458E+003
5.012E+014 1.026E+008 5.789E+002 1.278E+002 3.557E-058 1.091E-076 0.000E+000 0.000E+000 0.000E+000 0.000E+000 0.000E+000 1.474E+003
5.623E+014 8.146E+007 5.529E+002 1.139E+002 4.061E-052 1.907E-068 0.000E+000 0.000E+000 7.285E-056 0.000E+000 0.000E+000 1.488E+003
6.310E+014 6.471E+007 5.280E+002 1.015E+002 1.033E-046 2.496E-063 0.000E+000 0.000E+000 1.334E-052 0.000E+000 0.000E+000 1.500E+003
7.079E+014 5.140E+007 5.042E+002 9.049E+001 6.935E-042 1.610E-057 0.000E+000 0.000E+000 7.655E-049 0.000E+000 0.000E+000 1.511E+003
7.943E+014 4.083E+007 4.815E+002 8.065E+001 1.424E-037 2.955E-052 0.000E+000 0.000E+000 2.213E-045 0.000E+000 0.000E+000 1.521E+003
8.913E+014 3.243E+007 4.599E+002 7.188E+001 1.021E-033 1.859E-047 0.000E+000 0.000E+000 3.562E-042 0.000E+000 0.000E+000 1.530E+003
1.000E+015 2.576E+007 4.392E+002 6.406E+001 2.863E-030 1.171E-043 0.000E+000 0.000E+000 1.349E-039 0.000E+000 0.000E+000 1.537E+003
1.122E+015 2.046E+007 4.194E+002 5.709E+001 3.472E-027 1.417E-040 0.000E+000 0.000E+000 1.783E-037 0.000E+000 0.000E+000 1.544E+003
1.259E+015 1.625E+007 4.005E+002 5.088E+001 1.988E-024 3.572E-037 0.000E+000 0.000E+000 4.232E-035 0.000E+000 0.000E+000 1.551E+003
1.413E+015 1.291E+007 3.825E+002 4.535E+001 5.808E-022 3.613E-034 0.000E+000 0.000E+000 5.766E-033 0.000E+000 0.000E+000 1.556E+003
1.585E+015 1.026E+007 3.653E+002 4.042E+001 9.282E-020 8.817E-032 0.000E+000 0.000E+000 3.054E-031 0.000E+000 0.000E+000 1.561E+003
1.778E+015 8.146E+006 3.488E+002 3.602E+001 8.637E-018 1.734E-029 0.000E+000 0.000E+000 1.476E-029 0.000E+000 0.000E+000 1.565E+003
1.995E+015 6.471E+006 3.331E+002 3.211E+001 4.951E-016 1.337E-027 0.000E+000 0.000E+000 3.789E-028 0.000E+000 0.000E+000 1.569E+003
2.239E+015 5.140E+006 3.181E+002 2.861E+001 1.840E-014 9.315E-026 0.000E+000 0.000E+000 9.545E-027 0.000E+000 0.000E+000 1.573E+003
2.512E+015 4.083E+006 3.038E+002 2.550E+001 4.641E-013 2.787E-024 0.000E+000 0.000E+000 1.325E-025 0.000E+000 0.000E+000 1.576E+003
2.818E+015 3.243E+006 2.902E+002 2.273E+001 8.287E-012 8.248E-023 0.000E+000 0.000E+000 1.912E-024 0.000E+000 0.000E+000 1.579E+003
3.162E+015 2.576E+006 2.771E+002 2.026E+001 1.088E-010 1.458E-021 0.000E+000 0.000E+000 1.917E-023 0.000E+000 0.000E+000 1.581E+003
3.548E+015 2.046E+006 2.646E+002 1.805E+001 1.086E-009 2.136E-020 0.000E+000 0.000E+000 1.723E-022 0.000E+000 0.000E+000 1.583E+003
3.981E+015 1.625E+006 2.527E+002 1.609E+001 8.513E-009 2.152E-019 0.000E+000 0.000E+000 1.180E-021 0.000E+000 0.000E+000 1.585E+003
4.467E+015 1.291E+006 2.413E+002 1.434E+001 5.380E-008 1.955E-018 0.000E+000 0.000E+000 7.663E-021 0.000E+000 0.000E+000 1.587E+003
5.012E+015 1.026E+006 2.305E+002 1.278E+001 2.809E-007 1.572E-017 0.000E+000 0.000E+000 4.642E-020 0.000E+000 0.000E+000 1.589E+003
5.623E+015 8.146E+005 2.201E+002 1.139E+001 1.238E-006 7.119E-017 0.000E+000 0.000E+000 1.751E-019 0.000E+000 0.000E+000 1.590E+003
6.310E+015 6.471E+005 2.102E+002 1.015E+001 4.695E-006 3.704E-016 0.000E+000 0.000E+000 7.653E-019 0.000E+000 0.000E+000 1.591E+003
7.079E+015 5.140E+005 2.007E+002 9.049E+000 1.556E-005 1.260E-015 0.000E+000 0.000E+000 2.331E-018 0.000E+000 0.000E+000 1.592E+003
7.943E+015 4.083E+005 1.917E+002 8.065E+000 4.571E-005 4.498E-015 0.000E+000 0.000E+000 7.563E-018 0.000E+000 0.000E+000 1.593E+003
8.913E+015 3.243E+005 1.831E+002 7.188E+000 1.205E-004 1.361E-014 0.000E+000 0.000E+000 2.147E-017 0.000E+000 0.000E+000 1.594E+003
1.000E+016 2.576E+005 1.748E+002 6.406E+000 2.884E-004 3.619E-014 0.000E+000 0.000E+000 5.496E-017 0.000E+000 0.000E+000 1.595E+003
1.122E+016 2.046E+005 1.670E+002 5.709E+000 6.322E-004 9.323E-014 0.000E+000 0.000E+000 1.390E-016 0.000E+000 0.000E+000 1.596E+003
1.259E+016 1.625E+005 1.595E+002 5.088E+000 1.281E-003 1.989E-013 0.000E+000 0.000E+000 2.971E-016 0.000E+000 0.000E+000 1.596E+003
1.413E+016 1.291E+005 1.523E+002 4.535E+000 2.420E-003 4.150E-013 0.000E+000 0.000E+000 6.307E-016 0.000E+000 0.000E+000 1.597E+003
1.585E+016 1.026E+005 1.454E+002 4.042E+000 4.291E-003 7.828E-013 0.000E+000 0.000E+000 1.226E-015 0.000E+000 0.000E+000 1.597E+003
1.778E+016 8.146E+004 1.389E+002 3.602E+000 7.193E-003 1.419E-012 0.000E+000 0.000E+000 2.319E-015 0.000E+000 0.000E+000 1.598E+003
1.995E+016 6.471E+004 1.326E+002 3.211E+000 1.147E-002 2.391E-012 0.000E+000 0.000E+000 4.111E-015 0.000E+000 0.000E+000 1.598E+003
2.239E+016 5.140E+004 1.267E+002 2.861E+000 1.747E-002 3.855E-012 0.000E+000 0.000E+000 7.036E-015 0.000E+000 0.000E+000 1.599E+003
2.512E+016 4.083E+004 1.210E+002 2.550E+000 2.557E-002 5.929E-012 0.000E+000 0.000E+000 1.156E-014 0.000E+000 0.000E+000 1.599E+003
2.818E+016 3.243E+004 1.155E+002 2.273E+000 3.609E-002 8.823E-012 0.000E+000 0.000E+000 1.851E-014 0.000E+000 0.000E+000 1.599E+003
3.162E+016 2.576E+004 1.103E+002 2.026E+000 4.932E-002 1.262E-011 0.000E+000 0.000E+000 2.865E-014 0.000E+000 0.000E+000 1.599E+003
3.548E+016 2.046E+004 1.053E+002 1.805E+000 6.543E-002 1.730E-011 0.000E+000 0.000E+000 4.252E-014 0.000E+000 0.000E+000 1.600E+003
3.981E+016 1.625E+004 1.006E+002 1.609E+000 8.454E-002 2.309E-011 0.000E+000 0.000E+000 6.181E-014 0.000E+000 0.000E+000 1.600E+003
4.467E+016 1.291E+004 9.608E+001 1.434E+000 1.066E-001 2.958E-011 0.000E+000 0.000E+000 8.608E-014 0.000E+000 0.000E+000 1.600E+003
5.012E+016 1.026E+004 9.176E+001 1.278E+000 1.316E-001 3.745E-011 0.000E+000 0.000E+000 1.193E-013 0.000E+000 0.000E+000 1.600E+003
5.623E+016 8.146E+003 8.763E+001 1.139E+000 1.592E-001 4.635E-011 0.000E+000 0.000E+000 1.620E-013 0.000E+000 0.000E+000 1.600E+003
6.310E+016 6.471E+003 8.368E+001 1.015E+000 1.892E-001 5.650E-011 0.000E+000 0.000E+000 2.179E-013 0.000E+000 0.000E+000 1.600E+003
7.079E+016 5.140E+003 7.992E+001 9.049E-001 2.212E-001 6.709E-011 0.000E+000 0.000E+000 2.850E-013 0.000E+000 0.000E+000 1.601E+003
7.943E+016 4.083E+003 7.632E+001 8.065E-001 2.550E-001 7.849E-011 0.000E+000 0.000E+000 3.684E-013 0.000E+000 0.000E+000 1.601E+003
8.913E+016 3.243E+003 7.288E+001 7.188E-001 2.900E-001 9.026E-011 0.000E+000 0.000E+000 4.684E-013 0.000E+000 0.000E+000 1.601E+003
1.000E+017 2.576E+003 6.960E+001 6.406E-001 3.260E-001 1.028E-010 0.000E+000 0.000E+000 5.929E-013 0.000E+000 0.000E+000 1.601E+003
1.122E+017 2.046E+003 6.647E+001 5.709E-001 3.625E-001 1.160E-010 0.000E+000 0.000E+000 7.469E-013 0.000E+000 0.000E+000 1.601E+003
1.259E+017 1.625E+003 6.348E+001 5.088E-001 3.992E-001 1.287E-010 0.000E+000 0.000E+000 9.243E-013 0.000E+000 0.000E+000 1.601E+003
1.413E+017 1.291E+003 6.062E+001 4.535E-001 4.358E-001 1.423E-010 0.000E+000 0.000E+000 1.151E-012 0.000E+000 0.000E+000 1.601E+003
1.585E+017 1.026E+003 5.789E+001 4.042E-001 4.719E-001 1.554E-010 0.000E+000 0.000E+000 1.415E-012 0.000E+000 0.000E+000 1.601E+003
1.778E+017 8.146E+002 5.529E+001 3.602E-001 5.073E-001 1.681E-010 0.000E+000 0.000E+000 1.733E-012 0.000E+000 0.000E+000 1.601E+003
1.995E+017 6.471E+002 5.280E+001 3.211E-001 5.417E-001 1.805E-010 0.000E+000 0.000E+000 2.120E-012 0.000E+000 0.000E+000 1.601E+003
2.239E+017 5.140E+002 5.042E+001 2.861E-001 5.750E-001 1.922E-010 0.000E+000 0.000E+000 2.587E-012 0.000E+000 0.000E+000 1.601E+003
2.512E+017 4.083E+002 4.815E+001 2.550E-001 6.069E-001 2.037E-010 0.000E+000 0.000E+000 3.192E-012 0.000E+000 0.000E+000 1.601E+003
2.818E+017 3.243E+002 4.599E+001 2.273E-001 6.373E-001 2.150E-010 0.000E+000 0.000E+000 4.008E-012 0.000E+000 0.000E+000 1.601E+003
3.162E+017 2.576E+002 4.392E+001 2.026E-001 6.662E-001 2.257E-010 0.000E+000 0.000E+000 5.139E-012 0.000E+000 0.000E+000 1.601E+003
3.548E+017 2.046E+002 4.194E+001 1.805E-001 6.934E-001 2.358E-010 0.000E+000 0.000E+000 6.855E-012 0.000E+000 0.000E+000 1.601E+003
3.981E+017 1.625E+002 4.005E+001 1.609E-001 7.189E-001 2.457E-010 0.000E+000 0.000E+000 9.955E-012 0.000E+000 0.000E+000 1.601E+003
4.467E+017 1.291E+002 3.825E+001 1.434E-001 7.428E-001 2.542E-010 0.000E+000 0.000E+000 1.603E-011 0.000E+000 0.000E+000 1.601E+003
5.012E+017 1.026E+002 3.653E+001 1.278E-001 7.651E-001 2.627E-010 0.000E+000 0.000E+000 4.142E-011 0.000E+000 0.000E+000 1.601E+003
5.623E+017 8.146E+001 3.488E+001 1.139E-001 7.858E-001 2.700E-010 0.000E+000 0.000E+000 1.757E-010 0.000E+000 0.000E+000 1.601E+003
6.310E+017 6.471E+001 3.331E+001 1.015E-001 8.049E-001 2.772E-010 0.000E+000 0.000E+000 1.908E-010 0.000E+000 0.000E+000 1.601E+003
7.079E+017 5.140E+001 3.181E+001 9.049E-002 8.226E-001 2.837E-010 0.000E+000 0.000E+000 1.949E-010 0.000E+000 0.000E+000 1.601E+003
7.943E+017 4.083E+001 3.038E+001 8.065E-002 8.389E-001 2.899E-010 0.000E+000 0.000E+000 1.988E-010 0.000E+000 0.000E+000 1.601E+003
8.913E+017 3.243E+001 2.902E+001 7.188E-002 8.538E-001 2.956E-010 0.000E+000 0.000E+000 2.024E-010 0.000E+000 0.000E+000 1.601E+003
1.000E+018 2.576E+001 2.771E+001 6.406E-002 8.675E-001 3.006E-010 0.000E+000 0.000E+000 2.056E-010 0.000E+000 0.000E+000 1.601E+003
57 changes: 57 additions & 0 deletions data/train/20210527_gridC_Mdot2e-5_v17-5_T_eps_model_2023-01-16h16-20-07/input.txt
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! INPUT PARAMETERS FOR THE RATE13_CSE_MODEL
!
! PHYSICAL PARAMETERS OF THE CIRCUMSTELLAR ENVELOPE
R_STAR = 20000000000000
T_STAR = 2100.0
MLOSS = 2e-05
VELOCITY = 1750000
TEMPMODE = EPSILON
EPSILON_TEMP_LAW = 0.4
R_EPSIL = 20000000000000
!
! GRAIN PARAMETERS FOR H2 FORMATION AND CR IONISATION
A_G = 1e-05
X_G = 1.5e-12
ALBEDO = 0.5
ZETA = 1
GAMCO = 3
AUV_AV = 4.65
!
! RADIUS INFORMATION
R_INNER_CHEM = 100000000000000
R_OUTER_CHEM = 1000000000000000000
RESOLUTION = 0.05
!
! ANALYSE SUBROUTINE
PERFORM_ROUTINE = 0
ROUTINE_RADIUS = 0
FULL_ANALYSIS = 0
SENSITIVITY = 0
!
! DVODE
RTOL = 1e-05
ATOL = 1e-20
!
! CLUMPING PARAMETERS
CLUMPMODE = SMOOTH
FVOL = 0
L = 0
FIC = 0
!
! INNER PHOTONS
ISTELLAR = 0
IBIN = 0
RSCALE = 50
RDUST = 2
TBIN = 6000
RBIN = 0
!
! SHIELDING FUNCTIONS CO AND N2
FILECO = "/lhome/silkem/CHEM/src-IP-AP-HNR/shielding/co/shield.03.5.69-557-36.dat"
FILEN2 = "/lhome/silkem/CHEM/src-IP-AP-HNR/n2/Tex_10K_bH2_3km.s-1_bH_5km.s-1_NH_1e+20cm-2.dat"
! INPUT AND OUTPUT FILE NAMES
REACTIONS_FILE = "/lhome/silkem/CHEM/src-IP-AP-HNR/rates/rate16_IP_2330K_AP_6000K_corrected.rates"
SPECIES_FILE = "/lhome/silkem/CHEM/src-IP-AP-HNR/specs/rate16_IP_6000K_Crich_mean_Htot.specs"
! OUTPUT FILES CSFRAC_NAME.OUT AND CSNUM_NAME.OUT FOR FRACTIONAL ABUNDANCES AND NUMBER DENSITIES
OUTPUT_FOLDER = "/lhome/silkem/CHEM/Output_nov2022/20210527_gridC_Mdot2e-5_v17-5_T_eps/models/model_2023-01-16h16-20-07/"
SRC_CHEMISTRY = "src-IP-AP-HNR/"
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