-
Notifications
You must be signed in to change notification settings - Fork 4
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
These were suppresed during manuscript development to conserve energy. We are re-enabling them so that the `joss` release can be shown to pass tests with the current mt_metadata, and mth5 releases. The tests.yml pins mt_metadata to 0.3.7, and mth5 to 0.4.4 - also updated path to ipynb moved from example to tutorial in yml - (and updated the filename)
- Loading branch information
Showing
2 changed files
with
103 additions
and
0 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,103 @@ | ||
name: Testing | ||
|
||
on: | ||
push: | ||
branches: | ||
- '*' | ||
pull_request: | ||
branches: | ||
- '*' | ||
jobs: | ||
setup-build: | ||
name: Ex1 (${{ matrix.python-version }}, ${{ matrix.os }}) | ||
runs-on: ${{ matrix.os }} | ||
defaults: | ||
run: | ||
shell: bash -l {0} | ||
strategy: | ||
fail-fast: false | ||
matrix: | ||
os: ["ubuntu-latest"] | ||
python-version: [3.8, 3.9, "3.10", "3.11"] | ||
# python-version: ["3.10", ] | ||
|
||
steps: | ||
- uses: actions/checkout@v2 | ||
|
||
- name: Setup Miniconda | ||
uses: conda-incubator/[email protected] | ||
with: | ||
activate-environment: aurora-test | ||
python-version: ${{ matrix.python-version }} | ||
|
||
- name: Install Env | ||
run: | | ||
python --version | ||
conda install -c conda-forge pytest pytest-cov certifi">=2017.4.17" pandoc | ||
pip install -r requirements-dev.txt | ||
pip install mt_metadata==0.3.7 | ||
pip install mth5==0.4.4 | ||
- name: Install Our Package | ||
run: | | ||
pip install -e . | ||
conda list | ||
- name: Install Jupyter and dependencies | ||
run: | | ||
pip install jupyter | ||
pip install ipykernel | ||
python -m ipykernel install --user --name aurora-test | ||
# Install any other dependencies you need | ||
- name: Execute Jupyter Notebooks | ||
run: | | ||
jupyter nbconvert --to notebook --execute docs/examples/dataset_definition.ipynb | ||
jupyter nbconvert --to notebook --execute docs/examples/operate_aurora.ipynb | ||
jupyter nbconvert --to notebook --execute docs/tutorials/pole_zero_fitting/lemi_pole_zero_fitting_example.ipynb | ||
jupyter nbconvert --to notebook --execute docs/tutorials/processing_configuration.ipynb | ||
jupyter nbconvert --to notebook --execute docs/tutorials/process_cas04_single_station.ipynb | ||
jupyter nbconvert --to notebook --execute docs/tutorials/synthetic_data_processing.ipynb | ||
jupyter nbconvert --to notebook --execute tests/test_run_on_commit.ipynb | ||
# Replace "notebook.ipynb" with your notebook's filename | ||
# - name: Commit changes (if any) | ||
# run: | | ||
# git config --local user.email "[email protected]" | ||
# git config --local user.name "GitHub Action" | ||
# git commit -a -m "Execute Jupyter notebook" | ||
# git push | ||
# if: ${{ success() }} | ||
|
||
|
||
- name: Run Tests | ||
run: | | ||
# pytest -s -v tests/synthetic/test_fourier_coefficients.py | ||
# pytest -s -v tests/test_general_helper_functions.py | ||
pytest -s -v --cov=./ --cov-report=xml --cov=aurora | ||
- name: Upload coverage reports to Codecov | ||
uses: codecov/codecov-action@v4 | ||
with: | ||
token: ${{ secrets.CODECOV_TOKEN }} | ||
fail_ci_if_error: false | ||
|
||
|
||
- name: Build Doc | ||
if: ${{ (github.ref == 'refs/heads/main') && (matrix.python-version == '3.8')}} | ||
run: | | ||
cd docs | ||
make html | ||
cd .. | ||
- name: GitHub Pages | ||
if: ${{ (github.ref == 'refs/heads/main') && (matrix.python-version == '3.8')}} | ||
uses: crazy-max/[email protected] | ||
with: | ||
build_dir: docs/_build/html | ||
# Write the given domain name to the CNAME file | ||
# fqdn: aurora.simpeg.xyz | ||
# Allow Jekyll to build your site | ||
jekyll: false # optional, default is true | ||
env: | ||
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} |
File renamed without changes.