[WIP] Website theme and connection example

MetaPAL/Controllers/MsDataScanModelsController.cs

@@ -0,0 +1,181 @@
+using BayesianEstimation;
+using MassSpectrometry;
+using MetaPAL.Data;
+using MetaPAL.Models;
+using Microsoft.AspNetCore.Mvc;
+using Microsoft.EntityFrameworkCore;
+
+namespace MetaPAL.Controllers
+{
+    public class MsDataScanModelsController : Controller
+    {
+        private readonly ApplicationDbContext _context;
+
+        public MsDataScanModelsController(ApplicationDbContext context)
+        {
+            _context = context;
+        }
+
+        // GET: MsDataScanModels
+        public async Task<IActionResult> Index()
+        {
+            return _context.MsDataScans != null ?
+                        View(await _context.MsDataScans.ToListAsync()) :
+                        Problem("Entity set 'ApplicationDbContext.MsDataScan'  is null.");
+        }
+
+        // GET: MsDataScanModels/Details/5
+        public async Task<IActionResult> Details(int? id)
+        {
+            if (id == null || _context.MsDataScans == null)
+            {
+                return NotFound();
+            }
+
+            var msDataScanModel = await _context.MsDataScans
+                .FirstOrDefaultAsync(m => m.Id == id);
+            if (msDataScanModel == null)
+            {
+                return NotFound();
+            }
+
+            return View(msDataScanModel);
+        }
+
+        // GET: MsDataScanModels/Create
+        public IActionResult Create()
+        {
+            return View();
+        }
+
+        // POST: MsDataScanModels/Create
+        // To protect from overposting attacks, enable the specific properties you want to bind to.
+        // For more details, see http://go.microsoft.com/fwlink/?LinkId=317598.
+        [HttpPost]
+        [ValidateAntiForgeryToken]
+        public async Task<IActionResult> Create([Bind("Id,ScanNumber,SpectrumRepresentation,MassSpectrumType,MsLevel,MassAnalyzerType,ScanPolarity,ScanStartTime,ScanWindowUpperLimit,ScanWindowLowerLimit,FilterString,TotalIonCurrent,IonInjectionTime,PrecursorScanNumber,SelectedIonMz,ExperimentalPrecursorMonoisotopicMz,IsolationWindowTargetMz,IsolationWindowLowerOffset,IsolationWindowUpperOffset,DissociationMethod,NormalizedCollisionEnergy,SelectedIonChargeStateGuess,SelectedIonIntensity,NativeId")] MsDataScanModel msDataScanModel)
+        {
+            if (ModelState.IsValid)
+            {
+                _context.Add(msDataScanModel);
+                await _context.SaveChangesAsync();
+                return RedirectToAction(nameof(Index));
+            }
+            return View(msDataScanModel);
+        }
+
+        // GET: MsDataScanModels/Edit/5
+        public async Task<IActionResult> Edit(int? id)
+        {
+            if (id == null || _context.MsDataScans == null)
+            {
+                return NotFound();
+            }
+
+            var msDataScanModel = await _context.MsDataScans.FindAsync(id);
+            if (msDataScanModel == null)
+            {
+                return NotFound();
+            }
+            return View(msDataScanModel);
+        }
+
+        // POST: MsDataScanModels/Edit/5
+        // To protect from overposting attacks, enable the specific properties you want to bind to.
+        // For more details, see http://go.microsoft.com/fwlink/?LinkId=317598.
+        [HttpPost]
+        [ValidateAntiForgeryToken]
+        public async Task<IActionResult> Edit(int id, [Bind("Id,ScanNumber,SpectrumRepresentation,MassSpectrumType,MsLevel,MassAnalyzerType,ScanPolarity,ScanStartTime,ScanWindowUpperLimit,ScanWindowLowerLimit,FilterString,TotalIonCurrent,IonInjectionTime,PrecursorScanNumber,SelectedIonMz,ExperimentalPrecursorMonoisotopicMz,IsolationWindowTargetMz,IsolationWindowLowerOffset,IsolationWindowUpperOffset,DissociationMethod,NormalizedCollisionEnergy,SelectedIonChargeStateGuess,SelectedIonIntensity,NativeId")] MsDataScanModel msDataScanModel)
+        {
+            if (id != msDataScanModel.Id)
+            {
+                return NotFound();
+            }
+
+            if (ModelState.IsValid)
+            {
+                try
+                {
+                    _context.Update(msDataScanModel);
+                    await _context.SaveChangesAsync();
+                }
+                catch (DbUpdateConcurrencyException)
+                {
+                    if (!MsDataScanModelExists(msDataScanModel.Id))
+                    {
+                        return NotFound();
+                    }
+                    else
+                    {
+                        throw;
+                    }
+                }
+                return RedirectToAction(nameof(Index));
+            }
+            return View(msDataScanModel);
+        }
+
+        // GET: MsDataScanModels/Delete/5
+        public async Task<IActionResult> Delete(int? id)
+        {
+            if (id == null || _context.MsDataScans == null)
+            {
+                return NotFound();
+            }
+
+            var msDataScanModel = await _context.MsDataScans
+                .FirstOrDefaultAsync(m => m.Id == id);
+            if (msDataScanModel == null)
+            {
+                return NotFound();
+            }
+
+            return View(msDataScanModel);
+        }
+
+        // POST: MsDataScanModels/Delete/5
+        [HttpPost, ActionName("Delete")]
+        [ValidateAntiForgeryToken]
+        public async Task<IActionResult> DeleteConfirmed(int id)
+        {
+            if (_context.MsDataScans == null)
+            {
+                return Problem("Entity set 'ApplicationDbContext.MsDataScan'  is null.");
+            }
+            var msDataScanModel = await _context.MsDataScans.FindAsync(id);
+            if (msDataScanModel != null)
+            {
+                _context.MsDataScans.Remove(msDataScanModel);
+            }
+
+            await _context.SaveChangesAsync();
+            return RedirectToAction(nameof(Index));
+        }
+
+        private bool MsDataScanModelExists(int id)
+        {
+            return (_context.MsDataScans?.Any(e => 
+                e.Id == id)).GetValueOrDefault();
+        }
+
+        //POST
+        [HttpPost]
+        [ValidateAntiForgeryToken]
+        public IActionResult ReadMsDataFile(string path)
+        {
+            var msDataFile =
+                Readers.MsDataFileReader.GetDataFile(Path.Combine(path))
+                .GetMsDataScans()
+                .Select(x => MsDataScanModel.GetModelFromMsDataScan(x));
+
+            if (ModelState.IsValid)
+            {
+                _context.MsDataScans.AddRange(msDataFile);
+                _context.SaveChanges();
+                return RedirectToAction(nameof(Index));
+            }
+
+            return View(path);
+        }
+    }
+}