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Welcome to the vg wiki!

In a hurry? Check our Quickstart guide.

Variation graphs are powerful objects capable of describing populations of genomes. vg provides a set of tools to construct, manipulate, and visualize them in the context of genome informatics.

Please feel free to edit and extend this wiki! For any questions or concerns please use the issues page in this repository, or drop by the vg chat on gitter or irc (#vg in freenode).

First things first

• building vg (or not building vg)

VG Tools

• visualization
• working with a whole genome variation graph
• Basic Operations
• File Formats
• construction
• alignment
• SNP/INDEL calling with genotype
• Long read assemblies using vg msga
• SV calling with vg

VG RDF

• RDF:-for-VG
• Example:-Serving-out-an-RDF-version-of-a-VG-graph-with-Apache-Fuseki
• Example: Serving out an RDF version of a VG graph with Blazegraph
• Annotating-a-VG-graph-the-RDF-way