25.01

• chore(deps): update deps
• Merge branch 'bb2'
• chore(deps): use latest working oxlint version
• chore(deps): update deps, including the new vite-plugin-oxlint version that is compatible with oxlint 0.15
• warn when unknown GET parameters are detected, part of #444
• fix, docs: document and fix the GET params: resolve #443, resolve #444
• fix, refactor: refactor SNIK specific config options into a new config.ontology.snik object, resolve #448
• refactor: move non-fixed position (old code path) SNIK center node into the config and add depth option for repeated stars, part of #442
• docs: config docs except ontology specific config; part of #438
• docs: start ontology specific config docs; part of #438
• docs: information about styles and snik specific config
• docs: sparql queries basic
• docs: faq add (sub)ontology
• docs: fix for new initial view path
• Release 25.01

24.10

• chore(deps): Bump mikepenz/release-changelog-builder-action
• ci: switch from deprecated 'commitMode: true' to new 'mode: "COMMIT"
• ci: rename workflow dependabot prefix from 'chore' to 'ci'
• ci: rename 'build-changelog' ID to 'changelog' to be consistent with other repos
• chore(deps): update deps, skipping the broken Cytoscape 3.30.1 to go directly to 3.30.2: resolve #432
• add new issue template to confirm link, part of #430
• refactor: add new utility function to prefill issue template and use it for link confirmation, part of #430
• chore: fix tsconfig.json syntax
• build: set noEmit to true and add rootDirs in tsconfig.json
• chore: add updated automatically generated manual
• Create datasource files.
• More dataset work.
• refactor: unify SNIK & HITO query location
• refactor: config location
• refactor: update gitignore (new config location)
• refactor: fix type errors
• refactor: remove not-really-existing classes/nodes (License and Language) from initial view layout
• refactor: type annotations for shape- and color-functions
• refactor: get rdfs:type in hito sparql query, but hide it
• refactor: remove outdated hito config comments
• feat: (hito) use style of the rdf:type (if it has explicit style)
• docs: some jsdoc for hito config
• add version field to bug report template, part of #430
• make bug report issue template version field a text area and move it further down
• chore: update dependencies
• use bug report and feature request templates, part of #430
• chore(deps): update oxlint
• chore, fix: update deps, fix oxlint vite plugin incompatibility, use tilde version specifiers for oxlint and vite-plugin-oxlint
• docs: correct and uncomment README code docs link
• release 24.10, fix release changelog action

24.07

• add ORCID iD for HRB in paper
• add CITATION.cff
• delete codemeta.json as it is too cumbersome to update and redundant with CITATION.cff, may bring it back later with an automated pipeline
• add AB author and move AW as last author in senior leadership position
• add meta data information to README.md
• fix: show hotkeys after language switch (resolves #421)
• fix: English translation
• fix: submenu indicator (resolves #423)
• remove author AB again as we could not reach her to obtain consent, move to acknowledgement section in paper
• Add AB back as author as we reached her and obtained her consent for authorship.
• reference new SNIK Graph JOSE paper
• add fmt script and use prettier cache option
• refactor: switch from eslint to oxlint
• chore: update deps
• fix: hotkeys shown again
• add feature request GitHub issue template: resolve #424
• add a workaround to the tight layout freezing when the nodes are in the same position
• freeze cytoscape version 3.30.0 to keep context menu working, part of #399
• add number of loaded nodes and edges to about message
• fix submenu indicator: resolve #423 in production
• refactor: remove labels in menu.ts
• fix: uniform Title Case for menu items
• refactor: remove references to OntoWiki
• refactor: remove last references to OntoWiki
• chore: upgrade Husky from ^8.0.3 to ^9.1.1: resolve #410
• refactor: content of cxtmenu labels
• feat: German translation of cxtmenus
• fix: adapt chapter search SPARQL queries to ontology refactoring and fix presentUris with hideOthers = true: resolve #428
• test: remove unneeded isomorphic-fetch dependency in some tests to get rid of punycode deprecation warnings
• clarify instance filter description and i18n, add instance test, document adding a new language: resolve #420
• ci: add release note tag resolver filter: resolve #419
• refactor: github issue creation
• feat: Fully internationalise Filter menu option
• fix: typo
• build: require passing oxlint in pre commit hook
• fix: not loading when building
• fix: url too long in feedback about the visualization
• release 24.07
• fix: change automatic release note generator tag resolver from semver to sort and fix exclusion pattern: resolve #419
• fix: release 24.07 dependencies
• fix: treat release note filter as including

24.06

• make file menu labels more consistent, refactor menu structure for better type checking, resolve #417
• chore: update deps, keep eslint at major version 8 for now until typescript-eslint is compatible
• add glossary to manual, part of #417
• fix minor typos, thanks to LAB
• add file menu entry to open new view, resolves #416
• add bug report issue template
• add release issue template: resolve #411
• release 24.06

24.04

• change releasechecklist, see #177
• Use HTTPS for SPARQL endpoint.
• Remove superflous logging.
• Load and show edges. Resolves #195. Resolves #198.
• Add operations menu with a new operation 'Show Close Matches'.
• Add close match compound option.
• Add timeout protection to tight layout for large graphs.
• Update version to 1.1.1.
• i18n of devmode, resolves #201
• i18n of devmode, resloves #201
• naming convention in span id, see #201
• i18n of the new entries in menu.js and lang files, resolves #205
• replace log.trace with log.debug, resolves #202
• Specifiy named graphs when loading properties. Resolve #199.
• Fix bug for loading of properties, see #199. Verbose query however, shorten in log for issue #204.
• Connected new star mode nodes with existing ones. Resolve #207.
• refactor contextmenu, see #196
• Revise grouping of modular context menu and refactor code. Resolve #196.
• Fix link for "Submit Feedback about the Ontology".
• Fix remove edge base command.
• Refactor GitHub issue creation into utility method. Resolve #208.
• Remove unneded ESLint global declarations.
• Remove rdfGraph.js and use config instead. Resolve #169.
• Update dependencies.
• Add typescript config file for syntax checking.
• Remove unused hash code function.
• Add TypeScript definitions for Cytoscape.js.
• Add loglevel TypeScript types.
• Fix some TypeScript errors and warnings.
• Add type check script.
• Fix JSDoc TypeScript parameters.
• Set target to es6 for array to Set and back conversion for uniqueness.
• Fix some TypeScript errors.
• Disable strict TypeScript checking.
• Add cytoscape global. Part of issue #209.
• typescript error/warning fixing, see #209
• Fix some TypeScript errors and warnings. Part of issue #209.
• Update cytoscape from ^3.3.6 to ^3.5.4.
• Fix more TypeScript errors and warnings.
• put buttons and functionality into operations menu plus i18n of them, see #206
• merge conflict
• Add TypeScript notice to README. Part of #209.
• Fix log wrap bug. Was introduced to reduce TypeScript errors as part of #209.
• Remove trace from log. Add missing info. Should shorten it, see #204.
• Add Notyf notifications. Fix initial state of selected node for path on start.
• Remove some alerts or remodel them to log warn or error because we now have Notyf for that.
• Update cytoscape to ^3.7.0. Update JSDoc to ^3.6.2 (npm audit fix).
• Update dependencies. Use corejs 3 instead of babel polyfill.
• Add Webpack circular dependency plugin.
• Remove circular dependency between context menu files.
• Fix transpiled browser check.
• Load notyf later to ensure document.body is defined.
• Include corejs and the regenerator runtime instead of polyfill in index-prod.html.
• Add buttons again for Frank van Swieten lectures.
• Add shortcuts: Resolve #211.
• Remove leftover menu logging.
• new manual.html with actual fundctions and pics, resolves #212
• style details for manual plus new pics, see #212
• package.json updated for release 1.1.1
• Remove superflous hotkey init logging.
• Resolve #210. Add workaround to prevent edge position display bug with unknown cause.
• Replace workaround to fix #210 with a better solution: Include edges in the layouted elements.
• set log.debug to log.info to get back the whole functionality, see comments, resolves #215
• reset all the loglevels to earlier state, see comments, resolves #215
• rename operations to layout, write a manual for layout, resolves #206
• package.json for release
• fix small errors occured while testing
• mark the log as a log in new issues, see #204
• Resolve #218: Replace 'remove' with 'hide' in context menu of nodes and edges. Keep DEL key remove.
• Add Firefox 68+ about:config flag requirement to readme.
• Comment edge menus. Clarifies that limes menus are always available which is requested in #186 but was already implemented somewhere along the way.
• shorten the log, see #204
• Finish shortening log. Resolve #204.
• Solve #65 using a node size based on the logarithm of its degree.
• Ignore typescript output.
• Add new he-unconsolidated graph to allSubOntologies so it is visible in the search.
• Resolve #221: Use micromodal library. Remove test.html from repo.
• Rename overlay class to fullscreen to improve clarity.
• Increase notification show duration to 10s.
• Use data-i18n attribute instead of id for i18n.
• Complete first chapter search implementation. See #214.
• Fix table reset.
• Add menu to tab order. See #222.
• Refactor chaptersearch#showClasses and add hide parameter to graph#presentUris.
• Remove npm from package.json.
• Finish chapter based subgraph: resolve #214.
• Add link to deselect all checkboxes in chapter search. Highlight clickable chapters in chapter search. Part of #214.
• Remove index.json from the repo.
• Parse URL 'class' parameter to center around the given URI when loaded. See #219.
• Enter star mode in graph#presentUris when hideOthers=true.
• preparation for release v1.3, resolves #223
• changes on the release checklist
• Update eslint ecmaVersion to 2019.
• Fix missing graphs. Resolve #224.
• Improve display of combined matches. Part of #200.
• Implement all requirements to combined matches. Resolve #200. Minor problems still occur: 1. Hidden nodes don't hide parents. 2. Can only combine once per session.
• Add initially active options to config.
• Fix #225 by adding the unfiltered class after file load.
• Change log output to make it less verbose and reduce maximum length to 500 characters to resolve #226.
• Add parameter 'empty' for file loading.
• Add 'load' parameter to load from JSON.
• Remove leftover console.log statement.
• Add keyboard navigation to menu: Resolve #222.
• Hide connected edges with of hidden nodes. Resolve #227.
• Rename 'load' parameter to 'json'.
• Support other ontologies. Prototype of #213.
• Test for empty parameter presence only, so the value is ignored now and may be empty.
• Save space by not adding empty properties to nodes.
• Split loadGraphFromSparql() for easier maintainability and in preparation for instance loading.
• Add parameter to load instances.
• Add parameter to load virtual edges, domain-range triples for now. Display instances as stars.
• Fix loadGraphFromSparql().
• Add heuristic for star mode after file load.
• Fix mouse cursor position bug when using 'empty' POST parameter.
• Rename directed star to outgoing star and add incoming star.
• Fix DE grammar: 'Speicher' -> 'Speichere'.
• 'confirm limes link' -> 'confirm link'
• Add node context menu option to move all selected nodes to that position.
• Detect combine matches on file load.
• Rename 'Save Full Graph with Layout ...' to 'Save Session'.
• Verify that close match chain is followed and add comment.
• Enable context menu taphold per default.
• Add benchmark parameter.
• Refactor benchmark code in own file.
• Fix load graph from sparql menu option.
• Update versions.
• Update more packages.
• Set webpack to production mode.
• Add sub parameter.
• Hide edges on viewport.
• Revert "Hide edges on viewport."
• Fix default graphs on SPARQL load.
• Load source for non-SNIK ontologies as well. Make separate subontology layout independent from subs parameter, which enables it for non-SNIK ontologies.
• Add more functionality to non-SNIK ontologies, such as automatic colors.
• Update chapter search to the new meta:chapter property and the new meta:Chapter class.
• Finish graph search for OB and work around property path problem there. Resolve #236.
• Move node size function or constant to the configuration file and set a constant size of 39 as default value. Resolve #232.
• Layouts now only apply to selected elements if at least two nodes are selected as requested in issue #234.
• Start implementing tippy and refactoring the help.
• Set up tippy for the buttons and many of the menu entries. Does not work on context menu yet.
• Begin to split group matches functionality in border part and move part.
• Add more tooltips.
• Finish splitting up match group and move functionality. Resolve #233.
• Add tooltips to context menu. Resolve #228.
• Keep the center of selective layout nodes. Resolve #234.
• Add help to filter menu. Automatically flatten help data. Use empty string keys for object descriptions in help.
• Automatically generate manual. Resolve #229.
• Use local copy of fontawesome for panzoom. Resolve #238.
• Add viewport to fix scale to 1.0.
• Refactor several files to classes in preparation for multiview. In progress, does not run correctly yet.
• Finish refactoring to classes as part of preparation for multiview. Mostly tested but not enough for production.
• Multiplex star and path operations and hide for selections. Allow single compound moves. Multiplex compound children stars but there is still a display error.
• Fix display error of stars with compounds and with search. Still needs to be tested and bugfixed.
• Add close match node context menu function with multiplexing. Resolve #240.
• Combine labels for combined matches as requested in #239.
• Add first child node of compound node as path source. Part of #239.
• Fix multiplex bug with loop over selection.
• Improved visibility of large stars by reducing non-highlighted non-selected edge non-text opacity.
• Always hide other nodes in circle star.
• Show progress indicator when combining matches as it can take a while for a large visible graph.
• Fix hide function.
• Fix internal height of menu ul element.
• Set cytoscape container height in css.
• Enable multiple active graphs and test with 2 side by side.
• Go back to one graph as default but keep the capability for multiples.
• Improve class github issue reporting.
• Improve class and edge github issue reporting.
• Enable search on other ontoloies and fix class use. Requires a realignment with the new config template. Not finished, subtops are not loaded.
• Fix graph load query when using the SNIK SPARQL endpoint.
• Remove unused instances of context menu and search.
• Update all dependencies.
• Fix day mode. Resolve #244.
  -...

24.01

• Improve naming of showProperty option.
• chore: update dependencies
• ignore paths in build workflow
• fix tsdoc by correcting TypeScript module resolution
• docs: fix readme
• fix: Load from SPARQL Endpoint menu option
• feat: Load JSON Layout to graph
• feat: version check function implemented
• feat: add save layout menu item
• fix: make correct nodes visible
• style: fix eslint warning
• feat: add method for showing correct nodes and edges
• fix: duplicated view names error
• feat: updated json for initial view
• refactor: optimizations and fix menu item
• style: position comment properly
• feat: stop applying Euler layout when loading layout from JSON
• chore: release 24.01
• fix: increase test timeout
• docs: install packages after upgrading
• fix: package versions
• fix: temporarily enable skipLibCheck in TypeScript config as needed by current Vite
• fix: increase Fuse test timeout as well to account for slow GitHub actions
• chore: update deps

23.10

• chore: update to actions/checkout@v4
• ci: enable dependabot GitHub action version updates
• chore: update dependencies
• chore: update dependencies
• fix: try to fix save and load partial view. part of #403
• fix: improve naming of saving to Cytoscape format so users don't use it by accident and can't load it later
• refactor: start undoing cycles
• refactor: more refactoring to reduce cycles
• refactor: More refactoring and linting improvement. Fix Cytoscape test.
• build: add vitest globals for typechecking
• fix: improve upon the refactoring to fix resulting errors
• chore: Bump actions/setup-node from 3 to 4 in /.github/workflows
• refactor: add typechecking to tests and fix it
• doc: fix documentation
• ci: assign KonradHoeffner to Dependabot PRs and add chore prefix
• ci: add release workflow with automatically generated changelog
• fix: add --no-threads parameter to vitest call to fix freezes, resolves #407
• feat: add option to always show edge labels with the properties, resolve #404
• fix: always open circle star in new view, resolves #402
• chore: update fuse.js to 7.0.0
• chore: fix linting and type checking problems
• chore: disable dependency cycle warnings for now
• fix: release 23.10, fix minor issues found during testing

23.07

23.07

• Base cache key on package.json instead of package-lock.json.
• Use setup-node caching. Add --no-fund flag.
• Update dependencies and fix resulting problems
• Refactor: fix linter warnings, use named exports
• Fix spiderworm: resolve issue #400
• Release 23.07

23.04

Fix Dockerfiles.

22.10

Update dependencies including Vite. Should fix Windows parse5 bug and…