Skip to content

v4.8.5
Compare
Choose a tag to compare
@github-actions github-actions released this 12 Dec 19:51
· 372 commits to latest since this release
v4.8.5
5ae9ebc
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Verified
Learn about vigilant mode.

This release drops support for Python < 3.10, and also reorganizes and expands the documentation substantially!

Major new features:

  • Drop Python 3.8 and 3.9, default to Python 3.10 for most CI tasks (#2848)
  • Revise documentation structure; add internals page. (#2184)
  • Adjust documentation to recommend tax over lca for taxonomic analysis (#2777)

Bug fixes:

  • make sourmash plot labels/indices arguments make sense (#2790)

Cleanup and documentation updates:

  • Various minor updates to docs (#2854)
  • Deps: update typed-builder and histogram, bump MSRV to 1.65 (#2858)
  • Fix wheel building and semver checks post r0.12.0 (#2857)
  • Added seed to parameter strings #1732 (#2836)
  • Add link for developer documentation to sidebar (#2847)
  • add explicit install tutorial (#2826)
  • fix many minor documentation nits (#2814)
  • update docs for tax grep: only searches tax (#2789)
    *add usage docs for sig import/ingest (#2785)

Developer updates:

  • Feat: on-disk RevIndex based on RocksDB (#2230)
  • Fix many warnings from PYTHONDEVMODE=1 (#2849)
  • Build: Fix Rust 1.75 beta lints; flake update (#2841)
  • try pinning maturin to <1.3.0 to fix dev build CI (#2799)
  • minor updates to release procedure after 4.8.4 (#2783)
  • run rust checks always (#2787)
  • add __all__ to sig/__main__.py (#2778)
  • bump version to 4.8.5-dev (#2766)

Dependabot updates:

  • Bump ouroboros from 0.18.0 to 0.18.1 (#2875)
  • Bump once_cell from 1.18.0 to 1.19.0 (#2874)
  • Bump actions/setup-python from 4 to 5 (#2873)
  • Bump cachix/cachix-action from 12 to 13 (#2861)
  • Bump conda-incubator/setup-miniconda from 3.0.0 to 3.0.1 (#2860)
  • Bump cachix/install-nix-action from 23 to 24 (#2859)
  • Bump rkyv from 0.7.40 to 0.7.42 (#2863)
  • Bump csv from 1.2.0 to 1.3.0 (#2862)
  • Bump roaring from 0.10.1 to 0.10.2 (#2865)
  • Bump web-sys from 0.3.65 to 0.3.66 (#2864)
  • Bump byteorder from 1.4.3 to 1.5.0 (#2866)
  • Bump proptest from 1.3.1 to 1.4.0 (#2837)
  • Bump getrandom from 0.2.10 to 0.2.11 (#2839)
  • Bump web-sys from 0.3.64 to 0.3.65 (#2838)
  • Bump wasm-bindgen-test from 0.3.37 to 0.3.39 (#2853)
  • Bump wasm-bindgen from 0.2.88 to 0.2.89 (#2850)
  • Bump mymindstorm/setup-emsdk from 12 to 13 (#2851)
  • Bump conda-incubator/setup-miniconda from 2.2.0 to 3.0.0 (#2852)
  • Bump wasm-bindgen from 0.2.87 to 0.2.88 (#2834)
  • Bump serde_json from 1.0.107 to 1.0.108 (#2829)
  • Bump tempfile from 3.8.0 to 3.8.1 (#2828)
  • Bump bytecount from 0.6.5 to 0.6.7 (#2830)
  • Bump bytecount from 0.6.4 to 0.6.5 (#2822)
  • Bump thiserror from 1.0.49 to 1.0.50 (#2823)
  • Bump actions/setup-node from 3 to 4 (#2821)
  • Bump rustix from 0.37.20 to 0.37.25 (#2817)
  • Bump pypa/cibuildwheel from 2.16.1 to 2.16.2 (#2808)
  • Bump memmap2 from 0.8.0 to 0.9.0 (#2807)
  • Bump byteorder from 1.4.3 to 1.5.0 (#2806)
  • Bump pypa/cibuildwheel from 2.16.0 to 2.16.1 (#2797)
  • Bump thiserror from 1.0.48 to 1.0.49 (#2796)
  • Bump proptest from 1.2.0 to 1.3.1 (#2795)
  • Bump bytecount from 0.6.3 to 0.6.4 (#2794)
  • Bump memmap2 from 0.7.1 to 0.8.0 (#2780)
  • Bump rayon from 1.7.0 to 1.8.0 (#2782)
  • Bump docker/setup-qemu-action from 2 to 3 (#2767)
  • Bump pypa/cibuildwheel from 2.15.0 to 2.16.0 (#2768)
  • Bump serde_json from 1.0.106 to 1.0.107 (#2769)
  • Bump chrono from 0.4.30 to 0.4.31 (#2771)
Assets 7
Loading