Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

build(deps): bump snakemake from 7.32.3 to 8.4.4 #22

Closed
wants to merge 1 commit into from

Conversation

dependabot[bot]
Copy link
Contributor

@dependabot dependabot bot commented on behalf of github Feb 6, 2024

Bumps snakemake from 7.32.3 to 8.4.4.

Release notes

Sourced from snakemake's releases.

v8.4.4

8.4.4 (2024-02-05)

Bug Fixes

  • fixed bug in handling of resource overrides for remote job submission (5c06dd6)
  • output of rulegraph, closes #2656 (#2671) (f9b9110)
  • SyntaxWarning due to invalid escape sequences in non-raw regex pattern string (#2670) (3748d9d)

v8.4.3

8.4.3 (2024-02-02)

Bug Fixes

  • Do not scheduler execution message if no jobs are ready (b1c4f47)
  • fix string resource definition in CLI and profile (#2627) (bbd76ae)
  • if report files are within storage, retrieve them from storage before loading into report (60041bd)

v8.4.2

8.4.2 (2024-01-30)

Bug Fixes

  • allow lookup dpath or query to be a callable (33f1637)
  • fix error when passing callable as dpath or query of lookup function (0e5b878)

v8.4.1

8.4.1 (2024-01-30)

Fixes

  • fixed resource handling in profiles

v8.4.0

8.4.0 (2024-01-29)

Features

  • add cols argument to lookup function; fix various minor bugs on cluster systems (#2651) (ca7a602)

Bug Fixes

... (truncated)

Changelog

Sourced from snakemake's changelog.

8.4.4 (2024-02-05)

Bug Fixes

  • fixed bug in handling of resource overrides for remote job submission (5c06dd6)
  • output of rulegraph, closes #2656 (#2671) (f9b9110)
  • SyntaxWarning due to invalid escape sequences in non-raw regex pattern string (#2670) (3748d9d)

8.4.3 (2024-02-02)

Bug Fixes

  • Do not scheduler execution message if no jobs are ready (b1c4f47)
  • fix string resource definition in CLI and profile (#2627) (bbd76ae)
  • if report files are within storage, retrieve them from storage before loading into report (60041bd)

8.4.2 (2024-01-30)

Bug Fixes

  • allow lookup dpath or query to be a callable (33f1637)
  • fix error when passing callable as dpath or query of lookup function (0e5b878)

8.4.1 (2024-01-30)

Fixes

  • fixed resource handling in profiles

8.4.0 (2024-01-29)

Features

  • add cols argument to lookup function; fix various minor bugs on cluster systems (#2651) (ca7a602)

Bug Fixes

8.3.2 (2024-01-25)

... (truncated)

Commits
  • 805dd0c chore(main): release 8.4.4 (#2673)
  • 3748d9d fix: SyntaxWarning due to invalid escape sequences in non-raw regex pattern s...
  • f9b9110 fix: output of rulegraph, closes #2656 (#2671)
  • 0043d37 fix handling of annotated strings when expanding resources
  • 5c06dd6 fix: fixed bug in handling of resource overrides for remote job submission
  • 5a3ff9e chore(main): release 8.4.3 (#2665)
  • bbd76ae fix: fix string resource definition in CLI and profile (#2627)
  • 6252404 fmt
  • 4fac628 Merge branch 'main' of github.com:snakemake/snakemake
  • 60041bd fix: if report files are within storage, retrieve them from storage before lo...
  • Additional commits viewable in compare view

Dependabot compatibility score

Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting @dependabot rebase.


Dependabot commands and options

You can trigger Dependabot actions by commenting on this PR:

  • @dependabot rebase will rebase this PR
  • @dependabot recreate will recreate this PR, overwriting any edits that have been made to it
  • @dependabot merge will merge this PR after your CI passes on it
  • @dependabot squash and merge will squash and merge this PR after your CI passes on it
  • @dependabot cancel merge will cancel a previously requested merge and block automerging
  • @dependabot reopen will reopen this PR if it is closed
  • @dependabot close will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually
  • @dependabot show <dependency name> ignore conditions will show all of the ignore conditions of the specified dependency
  • @dependabot ignore this major version will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself)
  • @dependabot ignore this minor version will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself)
  • @dependabot ignore this dependency will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself)

Bumps [snakemake](https://github.com/snakemake/snakemake) from 7.32.3 to 8.4.4.
- [Release notes](https://github.com/snakemake/snakemake/releases)
- [Changelog](https://github.com/snakemake/snakemake/blob/main/CHANGELOG.md)
- [Commits](snakemake/snakemake@v7.32.3...v8.4.4)

---
updated-dependencies:
- dependency-name: snakemake
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
@dependabot dependabot bot added dependencies Pull requests that update a dependency file python Pull requests that update Python code labels Feb 6, 2024
Copy link
Contributor Author

dependabot bot commented on behalf of github Feb 7, 2024

Superseded by #23.

@dependabot dependabot bot closed this Feb 7, 2024
@dependabot dependabot bot deleted the dependabot/pip/snakemake-8.4.4 branch February 7, 2024 11:36
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
dependencies Pull requests that update a dependency file python Pull requests that update Python code
Projects
None yet
Development

Successfully merging this pull request may close these issues.

0 participants