Confounded Paper

I'm using the LaTeX Workshop plugin in VSCode with the latex-workshop.docker.enabled setting set to true.

With this, the PDF automatically builds anytime I save the .tex file.

I'm also using Better BibTeX in conjunction with Zotero and the Zotero Connector Chrome Plugin for managing citations.

Conversion to Docx

Make sure the line \usepackage[square,numbers]{natbib} is commented out and replaced with \usepackage{natbib} in the main file.

You might have to remove all the junk with rm thesis!(.tex).

latex2rtf thesis

Then open it up in Word & convert to Docx

Running the code

This will run the entire analysis: downloading and tidying the data, batch adjusting the data, calculating metrics, and making charts and tables. It takes around 4 hours to run to completion.

After running, the output figures and tabless will be in code/data/output/.

Dependencies:

• R
• Python >=3.6
• Pandas
• Scikit-Learn
• Numpy
• wget

cd code/
bash run_all.sh