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Issues list

Delete unnecessary intermediate files

#27 opened Nov 11, 2023 by stenglein-lab

Make sure fastq remain compressed

#26 opened Nov 11, 2023 by stenglein-lab

If no contigs produced, pipeline errors because of empty input to quantify_read_mapping_to_contigs

#24 opened Nov 8, 2023 by stenglein-lab

Problem when BLAST taxdb becomes temporarily out of sync with the NCBI taxonomy db

#23 opened Oct 26, 2023 by stenglein-lab

Issue with database created from vector base genome fasta

#22 opened Jun 14, 2023 by stenglein-lab

Avoid over-requesting resources

#20 opened May 2, 2023 by james-weger

Modify tally_blast_hits so it can output normalized taxa counts enhancement

#19 opened May 1, 2023 by stenglein-lab

Make this an nf-core (style) pipeline enhancement

#18 opened Apr 24, 2023 by stenglein-lab

Rather than passing multiqc a directory of fastqc reports, pass it a collection of files

#17 opened Mar 28, 2023 by stenglein-lab

Issue with conda environment

#15 opened Feb 1, 2023 by james-weger

Support use of remotely hosted host indexes enhancement

#14 opened Dec 20, 2022 by stenglein-lab

Use clustered protein (and nt) databases to speed up taxonomic assignments? enhancement

#8 opened Dec 14, 2022 by stenglein-lab

Improve documentation enhancement

#3 opened Mar 30, 2022 by stenglein-lab

Convert to nextflow DSL2 enhancement

#2 opened Mar 30, 2022 by stenglein-lab

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