Fixed bug in structure_plot example.

stephenslab · Jun 26, 2024 · 2a43799 · 2a43799
1 parent 47490a9
commit 2a43799
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,7 +1,7 @@
 Encoding: UTF-8
 Type: Package
 Package: fastTopics
-Version: 0.6-181
+Version: 0.6-182
 Date: 2024-06-25
 Title: Fast Algorithms for Fitting Topic Models and Non-Negative
     Matrix Factorizations to Count Data

diff --git a/R/fit_poisson_nmf.R b/R/fit_poisson_nmf.R
@@ -449,7 +449,7 @@ fit_poisson_nmf <- function (X, k, fit0, numiter = 100,
     cat(sprintf("Running at most %d %s updates, %s extrapolation ",
                 numiter,method.text,
                 ifelse(control$extrapolate,"with","without")))
-    cat("(fastTopics 0.6-181).\n")
+    cat("(fastTopics 0.6-182).\n")
   }
 
   # INITIALIZE ESTIMATES

diff --git a/R/structure_plot.R b/R/structure_plot.R
@@ -119,7 +119,7 @@
 #' # There is no requirement than the rows of L sum up to 1. To
 #' # illustrate, in this next example we have removed topic 5 from the a
 #' # structure plot.
-#' p2a <- structure_plot(L[,-5])
+#' p2a <- structure_plot(fit$L[,-5])
 #'
 #' # This is perhaps a more elegant way to remove topic 5 from the
 #' # structure plot:

diff --git a/man/structure_plot.Rd b/man/structure_plot.Rd