Solutions to Rosalind.info, Project Euler, LeetCode and Datacamp

| Machine Learning Scientist with Python Modules | Start | End | Notes | |--------------------------------------------------------- |------- |----- |------- | | Supervised Learning with scikit-learn | 12/14 | | lectures seem to follow this [book](https://github.com/amueller/introduction_to_ml_with_python) closely, which I have | | Unsupervised Learning in Python | | | | | Linear Classifiers in Python | | | | | Machine Learning with Tree-Based Models in Python | | | | | Extreme Gradient Boosting with XGBoost | | | | | Cluster Analysis in Python | | | | | Dimensionality Reduction in Python | | | | | Preprocessing for Machine Learning in Python | | | | | Machine Learning for Time Series Data in Python | | | | | Feature Engineering for Machine Learning in Python | | | | | Model Validation in Python | | | | | Introduction to Natural Language Processing in Python | | | | | Feature Engineering for NLP in Python | | | | | Introduction to TensorFlow in Python | | | | | Introduction to Deep Learning in Python | | | | | Introduction to Deep Learning with Keras | | | | | Advanced Deep Learning with Keras | | | | | Image Processing in Python | 12/14 | | Img, Scikit-image | | Image Processing with Keras in Python | | | Img | | Hyperparameter Tuning in Python | | | | | Introduction to PySpark | | | | | Machine Learning with PySpark | | | | | Winning a Kaggle Competition in Python | | | | | [Applying Hugging Face Machine Learning Pipelines in Python](https://www.educative.io/courses/hugging-face-machine-learning-pipelines-python) | 1/3 | | |

├──Rosalind Problem ID Folder - Solutions to problems folder
|	├── Readme.md - Documentation about the solution
│	├── *.py files - Python files
│	└── Data files - Input and output files

ID + Link to code	Title	Solved By
DNA	Counting DNA Nucleotides	66648
RNA	Transcribing DNA into RNA	59494
REVC	Complementing a Strand of DNA	53999
HAMM	Counting Point Mutations	34764
PROT	Translating RNA into Protein	27395
PERM	Enumerating Gene Orders	13034
PRTM	Calculating Protein Mass	12885
FIB	Rabbits and Recurrence Relations	31498
GC	Computing GC Content	30950
IPRB	Mendel's First Law	20588
SUBS	Finding a Motif in DNA	27507
MRNA	Inferring mRNA from Protein	9950
LEXF	Enumerating k-mers Lexicographically	7262
FRMT	Data Formats	7262
TFSQ	FASTQ Format Introduction	1874
SIGN	Enumerating Oriented Gene Orderings	4650
CONS	Consensus and Profile	14828
FIBD	Mortal Fibonacci Rabbits	12904
GRPH	Overlap Graphs	11986
IEV	Calculating Expected Offspring	11633
LCSM	Finding a Shared Motif	10552
LIA	Independent Alleles	6338
MPRT	Finding a Protein Motif	6250
ORF	Open Reading Frames	7560
REVP	Locating Restriction Sites	8025
SPLC	RNA Splicing	9068
LGIS	Longest Increasing Subsequence	3304
LONG	Genome Assembly as Shortest Superstring	3687
PMCH	Perfect Matchings and RNA Secondary Structures	3695
PPER	Partial Permutations	4927
PROB	Introduction to Random Strings	4871
SSEQ	Finding a Spliced Motif	5266
TRAN	Transitions and Transversions	5237
TREE	Completing a Tree	4209
CAT	Catalan Numbers and RNA Secondary Structures	1496
CORR	Error Correction in Reads	2262
INOD	Counting Phylogenetic Ancestors	3070
KMER	k-Mer Composition	3350
KMP	Speeding Up Motif Finding	2646
LCSQ	Finding a Shared Spliced Motif	2417
LEXV	Ordering Strings of Varying Length Lexicographically	3650
MMCH	Maximum Matchings and RNA Secondary Structures	1740
PDST	Creating a Distance Matrix	2495
REAR	Reversal Distance	1167
RSTR	Matching Random Motifs	1946
SSET	Counting Subsets	2826
ASPC	Introduction to Alternative Splicing	1794
EDIT	Edit Distance	1756
EVAL	Expected Number of Restriction Sites	1445
MOTZ	Motzkin Numbers and RNA Secondary Structures	935
NWCK	Distances in Trees	1129
SCSP	Interleaving Two Motifs	1094
SETO	Introduction to Set Operations	2168
SORT	Sorting by Reversals	881
SPEC	Inferring Protein from Spectrum	1712
TRIE	Introduction to Pattern Matching	1343
CONV	Comparing Spectra with the Spectral Convolution	1094
CTBL	Creating a Character Table	649
DBRU	Constructing a De Bruijn Graph	1131
EDTA	Edit Distance Alignment	1195
FULL	Inferring Peptide from Full Spectrum	794
INDC	Independent Segregation of Chromosomes	923
ITWV	Finding Disjoint Motifs in a Gene	455
LREP	Finding the Longest Multiple Repeat	595
NKEW	Newick Format with Edge Weights	705
RNAS	Wobble Bonding and RNA Secondary Structures	640
AFRQ	Counting Disease Carriers	774
CSTR	Creating a Character Table from Genetic Strings	420
CTEA	Counting Optimal Alignments	448
CUNR	Counting Unrooted Binary Trees	421
GLOB	Global Alignment with Scoring Matrix	842
PCOV	Genome Assembly with Perfect Coverage	812
PRSM	Matching a Spectrum to a Protein	585
QRT	Quartets	321
SGRA	Using the Spectrum Graph to Infer Peptides	520
SUFF	Encoding Suffix Trees	410
CHBP	Character-Based Phylogeny	222
CNTQ	Counting Quartets	237
EUBT	Enumerating Unrooted Binary Trees	223
GASM	Genome Assembly Using Reads	455
GCON	Global Alignment with Constant Gap Penalty	489
LING	Linguistic Complexity of a Genome	256
LOCA	Local Alignment with Scoring Matrix	540
MEND	Inferring Genotype from a Pedigree	355
MGAP	Maximizing the Gap Symbols of an Optimal Alignment	268
MREP	Identifying Maximal Repeats	228
MULT	Multiple Alignment	286
PDPL	Creating a Restriction Map	310
ROOT	Counting Rooted Binary Trees	320
SEXL	Sex-Linked Inheritance	583
SPTD	Phylogeny Comparison with Split Distance	222
WFMD	The Wright-Fisher Model of Genetic Drift	462
ALPH	Alignment-Based Phylogeny	152
ASMQ	Assessing Assembly Quality with N50 and N75	365
CSET	Fixing an Inconsistent Character Set	172
EBIN	Wright-Fisher's Expected Behavior	386
FOUN	The Founder Effect and Genetic Drift	369
GAFF	Global Alignment with Scoring Matrix and Affine Gap Penalty	399
GREP	Genome Assembly with Perfect Coverage and Repeats	278
OAP	Overlap Alignment	239
QRTD	Quartet Distance	107
SIMS	Finding a Motif with Modifications	291
SMGB	Semiglobal Alignment	257
KSIM	Finding All Similar Motifs	106
LAFF	Local Alignment with Affine Gap Penalty	236
OSYM	Isolating Symbols in Alignments	173
RSUB	Identifying Reversing Substitutions	127

• Working through Rosalind.info -> "Bioinformatics Stronghold" problems https://rosalind.info/problems/list-view/