Code

Feat@pssm virtual track#21

Code

Merged

aviezerl merged 18 commits intomastertanaylab/misha:masterfrom feat@pssm-virtual-tracktanaylab/misha:feat@pssm-virtual-trackCopy head branch name to clipboardJan 19, 2025

+1,418-156

Commits

Commits on Jan 15, 2025

• initial implementation - still getting NaNs

  aviezerl

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  3ec4f61

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• Merge branch 'master' into feat@pssm-virtual-track

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  a20c077

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• changed orientation of pssm matrix

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  e303115

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• added bidirect and prior

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  b50a455

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• expand sequence when interval is shorter than the motif

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Commits on Jan 16, 2025

• added pwm.max.pos vtrack function

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  6a93d3d

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• fix: combine strands on pwm.max

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  ac41a56

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• added docs

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  674905e

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• fix: added direction of pos when bidirection=TRUE

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  6d1e8a0

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• updated docs

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  9f524c0

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• added 'strand' argument

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  33012d2

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• some tests

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Commits on Jan 18, 2025

• bump version

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Commits on Jan 19, 2025

• use -Inf instead of -REAL(MAX)

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  687d91d

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• Added grevcomp function (reverse complement of a DNA sequence)

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• some tests

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  1c0aaba

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• updated wordlist

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• updated _pkgdown.yml

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