This repository is associated with Wang AG, Son M, et al., "Inflammatory memory of macrophages emerges from coordinated transcription factor and chromatin dynamics". Included are the scripts and data necessary to reproduce the figures in the manuscript.
The scripts are: figure1_through_4plotting.m - necesssary to produce figures 1 through 4 and associated supplemental figures In the folder "f5_atac" is the data and code necessary to produce the ATAC portion of figure 5 In the folder "figure6_RNAseq" is the data and code necessary to produce figure 6 The python script "DL_tiny_combined3-1.py" contains the code neccessary to reproduce the ML model in figure 7
All data are called in the appropriate scripts
10.5281/zenodo.14337874