covid_19_switzerland

This repository contains the data and the code used to generate the results shown in the paper: COVID-19 in Switzerland real-time epidemiological analyses powered by EpiGraphHub Published on Nature Scientific Data.

The data saved as CSV files in the data_article folder come from the Epigraphhub platform. You can look at the code used to extract this data in the download_data.ipynb notebook.

The code that came from the epigraphhub Python package refers to the version 1.2.0 of the platform.

The repo is organized as follows:

• The spatial_analysis.ipynb notebook shows how to create figures 1, 4, 5 and 6 of the article.
• The correlation_and_inference.ipynb notebook shows how to create figures 2, 3, 7 and 8 of the article.
• The forecast_models.ipynb notebook shows how to create figures 9 and how the metrics in Table 2 were computed.