ci(pre-commit.ci): autoupdate (#89)

* ci(pre-commit.ci): autoupdate updates: - [github.com/abravalheri/validate-pyproject: v0.22 → v0.23](abravalheri/validate-pyproject@v0.22...v0.23) - [github.com/crate-ci/typos: typos-dict-v0.11.35 → typos-dict-v0.11.37](crate-ci/typos@typos-dict-v0.11.35...typos-dict-v0.11.37) - [github.com/astral-sh/ruff-pre-commit: v0.7.3 → v0.8.1](astral-sh/ruff-pre-commit@v0.7.3...v0.8.1) * style(pre-commit.ci): auto fixes [...] --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
tlambert03 · Dec 30, 2024 · 8f1ee38 · 8f1ee38
1 parent dc73755
commit 8f1ee38
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Showing 10 changed files with 20 additions and 20 deletions.
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -5,18 +5,18 @@ ci:
 
 repos:
   - repo: https://github.com/abravalheri/validate-pyproject
-    rev: v0.22
+    rev: v0.23
     hooks:
       - id: validate-pyproject
 
   - repo: https://github.com/crate-ci/typos
-    rev: typos-dict-v0.11.35
+    rev: typos-dict-v0.11.37
     hooks:
       - id: typos
         args: [--force-exclude]  # omitting --write-changes
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.7.3
+    rev: v0.8.1
     hooks:
       - id: ruff
         args: [--fix, --unsafe-fixes]

diff --git a/src/microsim/_data_array.py b/src/microsim/_data_array.py
@@ -29,7 +29,7 @@ def DataArray(
     except ImportError:
         from xarray import DataArray  # type: ignore[assignment]
 
-__all__ = ["DataArray", "xrDataArray", "ArrayProtocol"]
+__all__ = ["ArrayProtocol", "DataArray", "xrDataArray"]
 
 xrDataArray = xarray.DataArray
 

diff --git a/src/microsim/allen/__init__.py b/src/microsim/allen/__init__.py
@@ -7,9 +7,9 @@
 from ._swc import SWC
 
 __all__ = [
+    "SWC",
     "ApiCellTypesSpecimenDetail",
-    "get_reconstructions",
     "NeuronReconstruction",
     "Specimen",
-    "SWC",
+    "get_reconstructions",
 ]
diff --git a/src/microsim/cosem/__init__.py b/src/microsim/cosem/__init__.py
@@ -3,11 +3,11 @@
 
 __all__ = [
     "CosemDataset",
-    "CosemView",
     "CosemImage",
+    "CosemView",
+    "bucket_cache",
+    "clear_cache",
     "fetch_datasets",
     "fetch_views",
     "organelles",
-    "bucket_cache",
-    "clear_cache",
 ]
diff --git a/src/microsim/cosem/_xarray.py b/src/microsim/cosem/_xarray.py
@@ -11,7 +11,7 @@
 
 from __future__ import annotations
 
-from collections.abc import Sequence  # noqa: TCH003
+from collections.abc import Sequence  # noqa: TC003
 from pathlib import Path
 from typing import TYPE_CHECKING, Any, Literal
 

diff --git a/src/microsim/fpbase.py b/src/microsim/fpbase.py
@@ -7,7 +7,7 @@
 
 from pydantic import BaseModel, Field, field_validator, model_validator
 
-__all__ = ["get_fluorophore", "get_microscope", "FPbaseFluorophore", "FPbaseMicroscope"]
+__all__ = ["FPbaseFluorophore", "FPbaseMicroscope", "get_fluorophore", "get_microscope"]
 
 
 ### Models ###

diff --git a/src/microsim/schema/__init__.py b/src/microsim/schema/__init__.py
@@ -23,31 +23,31 @@
     "BackendName",
     "Bandpass",
     "Camera",
-    "CosemLabel",
     "CameraCCD",
     "CameraCMOS",
     "CameraEMCCD",
     "Confocal",
+    "CosemLabel",
     "DeviceName",
     "DownscaledSpace",
     "ExtentScaleSpace",
     "Fluorophore",
     "FluorophoreDistribution",
     "Identity",
-    "SpectrumFilter",
+    "LightSource",
     "Longpass",
     "MatsLines",
     "Modality",
     "NumpyAPI",
     "ObjectiveLens",
     "OpticalConfig",
-    "LightSource",
     "Sample",
     "Settings",
     "ShapeExtentSpace",
     "ShapeScaleSpace",
     "Shortpass",
     "Simulation",
     "Spectrum",
+    "SpectrumFilter",
     "Widefield",
 ]
diff --git a/src/microsim/schema/detectors/__init__.py b/src/microsim/schema/detectors/__init__.py
@@ -4,11 +4,11 @@
 Detector = CameraEMCCD | CameraCMOS | CameraCCD
 
 __all__ = [
-    "Detector",
+    "ICX285",
     "Camera",
     "CameraCCD",
     "CameraCMOS",
     "CameraEMCCD",
+    "Detector",
     "simulate_camera",
-    "ICX285",
 ]
diff --git a/src/microsim/schema/modality/__init__.py b/src/microsim/schema/modality/__init__.py
@@ -2,4 +2,4 @@
 
 Modality = Confocal | Widefield | Identity
 
-__all__ = ["Identity", "Modality", "Confocal", "Widefield"]
+__all__ = ["Confocal", "Identity", "Modality", "Widefield"]
diff --git a/src/microsim/schema/optical_config/__init__.py b/src/microsim/schema/optical_config/__init__.py
@@ -2,11 +2,11 @@
 from .filter import Bandpass, Longpass, Placement, Shortpass, SpectrumFilter
 
 __all__ = [
-    "SpectrumFilter",
     "Bandpass",
-    "Shortpass",
+    "LightSource",
     "Longpass",
     "OpticalConfig",
-    "LightSource",
     "Placement",
+    "Shortpass",
+    "SpectrumFilter",
 ]
Original file line number	Diff line number	Diff line change
Expand Up		@@ -2,4 +2,4 @@

		Modality = Confocal \| Widefield \| Identity

		__all__ = ["Identity", "Modality", "Confocal", "Widefield"]
		__all__ = ["Confocal", "Identity", "Modality", "Widefield"]