AbLang: A language model for antibodies

Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python

Finding the pitfalls of deep learning predictors of interacting residues in antibodies 🦠

Estimates the Force-of-Infection of a given pathogen from population based sero-prevalence studies

AbLang: A language model for antibodies

Peptide Microarray Workflow. Python, open-source

Benchmarking computational methods for B cell receptor reconstruction from single cell RNA-seq data

An R package for simulating serosurvey data using custom models for the data-generating process

Integrated LC-MS/MS-based de novo sequencing of antibody chains in complex mixtures

Code repository for Master Thesis "Antibody-antigen binding affinity prediction through the use of geometric deep learning"

Classifying Antibodies for Expression

An R package and framework for epitope-specific antibody profiling for the data obtained with the Bead-Based Epitope Assay (BBEA)

Prediction of hydrophilicity & antigenic determinants from protein sequences

Software for in silico identification of immunologically-vulnerable regions of the HCV E2 glycoprotein and broadly neutralizing antibodies that target them

This repo contains the code and data models that were used in the Harmony project.

Code and data for the ML analysis of humoral and cellular responses to SARS-CoV-2

An automated web search for human antibodies labelling neurons and glia in the brain. Takes the direct output of Seurat's "FindMarkers()" and returns a data frame of antibodies based on information from the human protein atlas.

Working with in-silico antibody libraries

data and scripts of CMV cross-sectional serological study

Learning the Relationship between the Primary Structure of HIV Envelope Glycoproteins and Neutralization Activity of Particular Antibodies by Using Artificial Neural Networks