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AminoAcidFrequencyDistribution report updates: fixed bug in displayed… #772

AminoAcidFrequencyDistribution report updates: fixed bug in displayed…

AminoAcidFrequencyDistribution report updates: fixed bug in displayed… #772

Workflow file for this run

name: Run tests
on:
push:
branches: [ master ]
paths: ['**.py', '**.yaml']
pull_request:
branches: [ master ]
paths: ['**.py', '**.yaml']
jobs:
build:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
- name: Set up Python 3.11
uses: actions/setup-python@v2
with:
python-version: 3.11
# - uses: actions/cache@v2
# with:
# path: ~/.cache/pip
# key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements.txt') }}
# restore-keys: |
# ${{ runner.os }}-pip-
- name: Install Python dependencies
run: |
python -m pip install --upgrade pip
pip install flake8 pytest
pip install -r requirements.txt -r requirements_TCRdist.txt -r requirements_DeepRC.txt -r requirements_generative_models.txt
- name: Install CompAIRR
run: |
git clone https://github.com/uio-bmi/compairr.git
make -C compairr
# - name: Lint with flake8
# run: |
# # stop the build if there are Python syntax errors or undefined names
# flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
# # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
# flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
- name: Test with pytest
env:
PYTHONFAULTHANDLER: 1
run: python -m pytest