Making required changes for CRAN

viralemergence · Sep 30, 2024 · 9d9e5e8 · 9d9e5e8
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diff --git a/..Rcheck/00check.log b/..Rcheck/00check.log
diff --git a/..Rcheck/R_check_bin/R b/..Rcheck/R_check_bin/R
diff --git a/..Rcheck/R_check_bin/Rscript b/..Rcheck/R_check_bin/Rscript
diff --git a/CRAN-SUBMISSION b/CRAN-SUBMISSION
@@ -0,0 +1,3 @@
+Version: 1.0.0
+Date: 2024-09-27 18:22:56 UTC
+SHA: a98f40c26e8a84234ef72202f2416410563a8869
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -2,12 +2,18 @@ Package: epizootic
 Title: Spatially Explicit Population Models of Disease Transmission in Wildlife
 Version: 1.0.0
 Authors@R: c(
-    person("July", "Pilowsky", email = "[email protected]", role = c("aut", "cre"),
+    person("July", "Pilowsky", email = "[email protected]", 
+           role = c("aut", "cre"), 
            comment = c(ORCID = "https://orcid.org/0000-0002-6376-2585")),
-    person("National Science Foundation Biology Integration Institute 2213854", role = "fnd")
+    person("National Science Foundation Biology Integration Institute 2213854", 
+           role = "fnd")
     )
-Description: This extension of the pattern-oriented modeling framework of the poems package
-    provides a collection of modules and functions customized for modeling disease transmission on a population scale in a spatiotemporally explicit manner. This includes seasonal time steps, dispersal functions that track disease state of dispersers, results objects that store disease states, and a population simulator that includes disease dynamics.
+Description: This extension of the pattern-oriented modeling framework of the 
+    'poems' package provides a collection of modules and functions customized 
+    for modeling disease transmission on a population scale in a spatiotemporally 
+    explicit manner. This includes seasonal time steps, dispersal functions that 
+    track disease state of dispersers, results objects that store disease states, 
+    and a population simulator that includes disease dynamics.
 License: GPL (>= 3)
 Encoding: UTF-8
 Roxygen: list(markdown = TRUE)

diff --git a/README.Rmd b/README.Rmd
@@ -17,15 +17,21 @@ knitr::opts_chunk$set(
 
 <!-- badges: start -->
 [![R-CMD-check](https://github.com/viralemergence/epizootic/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/viralemergence/epizootic/actions/workflows/R-CMD-check.yaml)
-[![CRAN status](https://www.r-pkg.org/badges/version/paleopop)](https://CRAN.R-project.org/package=paleopop)
-[![Download_count](https://cranlogs.r-pkg.org/badges/grand-total/paleopop)](https://CRAN.R-project.org/package=paleopop)
-[![Last commit](https://img.shields.io/github/last-commit/GlobalEcologyLab/paleopop.svg)](https://github.com/GlobalEcologyLab/paleopop/commits/master)
+[![CRAN status](https://www.r-pkg.org/badges/version/epizootic)](https://CRAN.R-project.org/package=epizootic)
+[![Download_count](https://cranlogs.r-pkg.org/badges/grand-total/epizootic)](https://CRAN.R-project.org/package=epizootic)
+[![Last commit](https://img.shields.io/github/last-commit/GlobalEcologyLab/epizootic.svg)](https://github.com/viralemergence/epizootic/commits/master)
 <!-- badges: end -->
 
 `epizootic` is an extension to `poems`, a spatially-explicit, process-explicit, pattern-oriented framework for modeling population dynamics. This extension adds functionality for modeling disease dynamics in wildlife. It also adds capability for seasonality and for unique dispersal dynamics for each life cycle stage.
 
 ## Installation
 
+You can install the latest release on CRAN with:
+
+``` r
+install.packages("epizootic")
+```
+
 You can install the latest version of epizootic from [GitHub](https://github.com/) with:
 
 ``` r

diff --git a/README.md b/README.md
@@ -7,10 +7,10 @@
 
 [![R-CMD-check](https://github.com/viralemergence/epizootic/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/viralemergence/epizootic/actions/workflows/R-CMD-check.yaml)
 [![CRAN
-status](https://www.r-pkg.org/badges/version/paleopop)](https://CRAN.R-project.org/package=paleopop)
-[![Download_count](https://cranlogs.r-pkg.org/badges/grand-total/paleopop)](https://CRAN.R-project.org/package=paleopop)
+status](https://www.r-pkg.org/badges/version/epizootic)](https://CRAN.R-project.org/package=epizootic)
+[![Download_count](https://cranlogs.r-pkg.org/badges/grand-total/epizootic)](https://CRAN.R-project.org/package=epizootic)
 [![Last
-commit](https://img.shields.io/github/last-commit/GlobalEcologyLab/paleopop.svg)](https://github.com/GlobalEcologyLab/paleopop/commits/master)
+commit](https://img.shields.io/github/last-commit/GlobalEcologyLab/epizootic.svg)](https://github.com/viralemergence/epizootic/commits/master)
 <!-- badges: end -->
 
 `epizootic` is an extension to `poems`, a spatially-explicit,
@@ -21,6 +21,12 @@ unique dispersal dynamics for each life cycle stage.
 
 ## Installation
 
+You can install the latest release on CRAN with:
+
+``` r
+install.packages("epizootic")
+```
+
 You can install the latest version of epizootic from
 [GitHub](https://github.com/) with:
 

diff --git a/man/epizootic-package.Rd b/man/epizootic-package.Rd
diff --git a/man/figures/README-disease_simulator-1.png b/man/figures/README-disease_simulator-1.png
diff --git a/man/figures/README-disease_simulator-2.png b/man/figures/README-disease_simulator-2.png