Hourly export update

waldronlab · Nov 16, 2024 · e89da0a · e89da0a
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diff --git a/bugsigdb_signatures_genus_metaphlan.gmt b/bugsigdb_signatures_genus_metaphlan.gmt
@@ -1,4 +1,4 @@
-# BugSigDB 2024-11-16_15:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org
+# BugSigDB 2024-11-16_18:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org
 bsdb:1/1/1_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_UP	NA	k__Bacteria|p__Actinomycetota|c__Actinomycetes|o__Actinomycetales|f__Actinomycetaceae|g__Actinomyces	k__Bacteria|p__Actinomycetota|c__Actinomycetes|o__Mycobacteriales|f__Corynebacteriaceae|g__Corynebacterium	k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus	k__Bacteria|p__Bacillota|c__Tissierellia|o__Tissierellales|f__Peptoniphilaceae|g__Peptoniphilus	k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Dorea	k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium	k__Bacteria|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Sutterellaceae|g__Sutterella	k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lacticaseibacillus	k__Bacteria|p__Bacillota|c__Bacilli|o__Bacillales|f__Bacillaceae|g__Bacillus
 bsdb:1/1/2_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_DOWN	NA	k__Bacteria|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Coprobacillaceae|g__Coprobacillus
 bsdb:1/2/1_Hyperplastic-Polyp:hyperplastic-polyp-cases_vs_controls_UP	NA	k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Anaerostipes	k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lacticaseibacillus
@@ -5306,3 +5306,4 @@ bsdb:1223/1/2_Autism-spectrum-disorder:Children-with-Autism-Spectrum-Disorder-(A
 bsdb:1224/1/1_Vitiligo:Vitiligo-Patients_vs_Healthy-Control_UP	NA	k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Pectobacteriaceae|g__Pectobacterium	k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Erysipelotrichaceae|g__Bulleidia	k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Anaerobutyricum	k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Pygmaiobacter	k__Bacteria|p__Bacteroidota|c__Flavobacteriia|o__Flavobacteriales|f__Flavobacteriaceae|g__Flavobacterium	k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Peptostreptococcales|f__Peptostreptococcaceae|g__Paraclostridium	k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Cellvibrionales|f__Cellvibrionaceae|g__Cellvibrio	k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Gemellaceae|g__Gemella	k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|g__Howardella	k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Lachnospira	k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Pseudonocardiales|f__Pseudonocardiaceae|g__Pseudonocardia
 bsdb:1224/1/2_Vitiligo:Vitiligo-Patients_vs_Healthy-Control_DOWN	NA	k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella
 bsdb:1225/1/2_Health-related-quality-of-life-measurement:Disease-associated(Chronically-diseased-individuals)_vs_Health-associated(Healthy)_UP	NA	k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Coprococcus
+bsdb:1225/2/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-Physiological-Variables_vs_Healthy-individuals_DOWN	NA	k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Brachyspirales|f__Brachyspiraceae|g__Brachyspira	k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Odoribacteraceae|g__Butyricimonas	k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema
diff --git a/bugsigdb_signatures_genus_ncbi.gmt b/bugsigdb_signatures_genus_ncbi.gmt
@@ -1,4 +1,4 @@
-# BugSigDB 2024-11-16_15:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org
+# BugSigDB 2024-11-16_18:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org
 bsdb:1/1/1_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_UP	NA	1654	1716	1301	162289	189330	33024	40544	2759736	1386
 bsdb:1/1/2_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_DOWN	NA	100883
 bsdb:1/2/1_Hyperplastic-Polyp:hyperplastic-polyp-cases_vs_controls_UP	NA	207244	2759736
@@ -5224,4 +5224,5 @@ bsdb:1221/2/2_Clostridium-difficile-infection:Euthanized_vs_Before-Clostridioide
 bsdb:1223/1/1_Autism-spectrum-disorder:Children-with-Autism-Spectrum-Disorder-(ASD)_vs_Neurotypical-children_UP	NA	310297	821	729	1531
 bsdb:1223/2/1_Autism-spectrum-disorder:Children-with-Autism-Spectrum-Disorder-(ASD)_vs_Neurotypical-children_UP	NA	1531
 bsdb:1225/2/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-Physiological-Variables_vs_Healthy-individuals_UP	NA	33025	2292206	2293024	40545	166486	1285585	1318	907	2292205	209880	1776391	2126740	52226	1304	729	2293011	33039	292800	253257	39491	360807	39486	853
-bsdb:1225/2/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-Physiological-Variables_vs_Healthy-individuals_DOWN	NA	1519439	1628085
+bsdb:1225/2/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-Physiological-Variables_vs_Healthy-individuals_DOWN	NA	1628085	29522	2093856	1502	45851	2173	1519439	1871022	1161942	167	2763037	2293015	2564099	2293093	2086583
+bsdb:1225/3/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-acute-conditions_vs_Healthy-individuals_UP	NA	1318	1304
diff --git a/bugsigdb_signatures_genus_ncbi_exact.gmt b/bugsigdb_signatures_genus_ncbi_exact.gmt
@@ -1,4 +1,4 @@
-# BugSigDB 2024-11-16_15:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org
+# BugSigDB 2024-11-16_18:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org
 bsdb:1/1/1_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_UP	NA	1654	1716	1301	162289	189330	33024	40544	1386
 bsdb:1/1/2_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_DOWN	NA	100883
 bsdb:1/2/1_Hyperplastic-Polyp:hyperplastic-polyp-cases_vs_controls_UP	NA	207244
@@ -4375,4 +4375,5 @@ bsdb:1221/2/2_Clostridium-difficile-infection:Euthanized_vs_Before-Clostridioide
 bsdb:1223/1/1_Autism-spectrum-disorder:Children-with-Autism-Spectrum-Disorder-(ASD)_vs_Neurotypical-children_UP	NA	310297	821	729	1531
 bsdb:1223/2/1_Autism-spectrum-disorder:Children-with-Autism-Spectrum-Disorder-(ASD)_vs_Neurotypical-children_UP	NA	1531
 bsdb:1225/2/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-Physiological-Variables_vs_Healthy-individuals_UP	NA	33025	2292206	2293024	40545	166486	1285585	1318	907	2292205	209880	1776391	2126740	52226	1304	729	2293011	33039	292800	253257	39491	360807	39486	853
-bsdb:1225/2/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-Physiological-Variables_vs_Healthy-individuals_DOWN	NA	1519439	1628085
+bsdb:1225/2/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-Physiological-Variables_vs_Healthy-individuals_DOWN	NA	1628085	29522	2093856	1502	45851	2173	1519439	1871022	1161942	167	2763037	2293015	2564099	2293093	2086583
+bsdb:1225/3/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-acute-conditions_vs_Healthy-individuals_UP	NA	1318	1304
diff --git a/bugsigdb_signatures_genus_taxname.gmt b/bugsigdb_signatures_genus_taxname.gmt
@@ -1,4 +1,4 @@
-# BugSigDB 2024-11-16_15:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org
+# BugSigDB 2024-11-16_18:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org
 bsdb:1/1/1_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_UP	NA	Actinomyces	Corynebacterium	Streptococcus	Peptoniphilus	Dorea	Phascolarctobacterium	Sutterella	Lacticaseibacillus	Bacillus
 bsdb:1/1/2_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_DOWN	NA	Coprobacillus
 bsdb:1/2/1_Hyperplastic-Polyp:hyperplastic-polyp-cases_vs_controls_UP	NA	Anaerostipes	Lacticaseibacillus
@@ -5306,3 +5306,4 @@ bsdb:1223/1/2_Autism-spectrum-disorder:Children-with-Autism-Spectrum-Disorder-(A
 bsdb:1224/1/1_Vitiligo:Vitiligo-Patients_vs_Healthy-Control_UP	NA	Pectobacterium	Bulleidia	Anaerobutyricum	Pygmaiobacter	Flavobacterium	Paraclostridium	Cellvibrio	Gemella	Howardella	Lachnospira	Pseudonocardia
 bsdb:1224/1/2_Vitiligo:Vitiligo-Patients_vs_Healthy-Control_DOWN	NA	Prevotella
 bsdb:1225/1/2_Health-related-quality-of-life-measurement:Disease-associated(Chronically-diseased-individuals)_vs_Health-associated(Healthy)_UP	NA	Coprococcus
+bsdb:1225/2/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-Physiological-Variables_vs_Healthy-individuals_DOWN	NA	Brachyspira	Butyricimonas	Treponema