May 8, 2019, Wednesday

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Liya Wang edited this page May 10, 2019 · 1 revision

EMS workflow
- Yinping's data on BNB
  - /sonas-hs/ware/hpc/data/yjiao/BSA_for_SciAPPs
  - /sonas-hs/ware/hpc_norepl/data/yjiao/sorghum/BTX623_v3/BTX623_v3.vcf
    - This has 'Chr01' instead of 1, need to modify
- bcftools filter in ems_filter can't have '-O z'