exit if segment length exceeds max mapping length

waveygang · Sep 6, 2024 · 081671c · 081671c
1 parent 4521c10
commit 081671c
Showing 1 changed file with 5 additions and 0 deletions.
diff --git a/src/interface/parse_args.hpp b/src/interface/parse_args.hpp
@@ -441,6 +441,11 @@ void parse_args(int argc,
         map_parameters.max_mapping_length = 50000;
     }
 
+    if (map_parameters.segLength >= map_parameters.max_mapping_length) {
+        std::cerr << "[wfmash] ERROR, skch::parseandSave, segment length should not be larger than max mapping length." << std::endl;
+        exit(1);
+    }
+
     if (drop_low_map_pct_identity) {
         map_parameters.keep_low_pct_id = false;
     } else {