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Update tsv, md and png files
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actions-user committed Nov 8, 2024
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1 change: 1 addition & 0 deletions _data/WP5200-bibliography.tsv
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ID Database Citation
9412493 Pubmed "Interaction of muscle and brain sodium channels with multiple members of the syntrophin family of dystrophin-associated proteins. Gee SH, Madhavan R, Levinson SR, Caldwell JH, Sealock R, Froehner SC. J Neurosci. 1998 Jan 1;18(1):128–37. <a href=""http://www.ncbi.nlm.nih.gov/pubmed/9412493"" target=""_blank"" class=""external"" rel=""nofollow"">PubMed</a> <a href=""https://europepmc.org/abstract/MED/9412493"" target=""_blank"" class=""external"" rel=""nofollow"">Europe PMC</a> <a href=""https://scholia.toolforge.org/pubmed/9412493"" target=""_blank"" class=""external"" rel=""nofollow"">Scholia</a>"
15077147 Pubmed "Mitogen-activated protein kinases in apoptosis regulation. Wada T, Penninger JM. Oncogene. 2004 Apr 12;23(16):2838–49. <a href=""http://www.ncbi.nlm.nih.gov/pubmed/15077147"" target=""_blank"" class=""external"" rel=""nofollow"">PubMed</a> <a href=""https://europepmc.org/abstract/MED/15077147"" target=""_blank"" class=""external"" rel=""nofollow"">Europe PMC</a> <a href=""https://scholia.toolforge.org/pubmed/15077147"" target=""_blank"" class=""external"" rel=""nofollow"">Scholia</a>"
15102918 Pubmed "Mice lacking sodium channel beta1 subunits display defects in neuronal excitability, sodium channel expression, and nodal architecture. Chen C, Westenbroek RE, Xu X, Edwards CA, Sorenson DR, Chen Y, et al. J Neurosci. 2004 Apr 21;24(16):4030–42. <a href=""http://www.ncbi.nlm.nih.gov/pubmed/15102918"" target=""_blank"" class=""external"" rel=""nofollow"">PubMed</a> <a href=""https://europepmc.org/abstract/MED/15102918"" target=""_blank"" class=""external"" rel=""nofollow"">Europe PMC</a> <a href=""https://scholia.toolforge.org/pubmed/15102918"" target=""_blank"" class=""external"" rel=""nofollow"">Scholia</a>"
17442248 Pubmed "Interdependence of PKC-dependent and PKC-independent pathways for presynaptic plasticity. Wierda KDB, Toonen RFG, de Wit H, Brussaard AB, Verhage M. Neuron. 2007 Apr 19;54(2):275–90. <a href=""http://www.ncbi.nlm.nih.gov/pubmed/17442248"" target=""_blank"" class=""external"" rel=""nofollow"">PubMed</a> <a href=""https://europepmc.org/abstract/MED/17442248"" target=""_blank"" class=""external"" rel=""nofollow"">Europe PMC</a> <a href=""https://scholia.toolforge.org/pubmed/17442248"" target=""_blank"" class=""external"" rel=""nofollow"">Scholia</a>"
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1 change: 1 addition & 0 deletions _data/WP5200-datanodes.tsv
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Expand Up @@ -4,6 +4,7 @@ Ca2+ Metabolite chebi:29108 "" wikidata:Q23905776 chebi:29108 inchikey:BHPQY
GABA Metabolite chebi:16865 "" wikidata:Q106345483;wikidata:Q210021 chebi:16865;chebi:59888 inchikey:BTCSSZJGUNDROE-UHFFFAOYSA-N pubchem.compound:6992099;pubchem.compound:119 chemspider:116 hmdb:HMDB0000112 kegg.compound:C00334 lipidmaps:LMFA01100039
Syntaxin Metabolite wikidata:Q390407 ""
Na+ Metabolite chebi:29101 "" wikidata:Q3154110 chebi:29101 inchikey:FKNQFGJONOIPTF-UHFFFAOYSA-N pubchem.compound:923 chemspider:899 hmdb:HMDB0000588 kegg.compound:C01330
SNTA1 GeneProduct ensembl:ENSG00000101400 "Guides the positioning of Nav1.1 on the membrane" ensembl:ENSG00000101400 ncbigene:6640 hgnc.symbol:SNTA1 uniprot:Q13424
SCN1A GeneProduct ensembl:ENSG00000144285 "" ensembl:ENSG00000144285 ncbigene:6323 hgnc.symbol:SCN1A uniprot:A0A286YFA8;uniprot:A0A286YEQ8;uniprot:A0A1B0GWE6;uniprot:A0A5F9ZHI6;uniprot:A0A1B0GVX7;uniprot:A0A1B0GUX7;uniprot:A0A1W2PPJ3;uniprot:A0A1B0GUN7;uniprot:P35498;uniprot:A0A286YF26
PRR5L Protein uniprot:Q6MZQ0 "" ensembl:ENSG00000135362 ncbigene:79899 hgnc.symbol:PRR5L uniprot:E9PJV4;uniprot:E9PL62;uniprot:E9PLJ6;uniprot:E9PS02;uniprot:E9PP62;uniprot:Q6MZQ0;uniprot:E9PP25;uniprot:E9PIU0
PRKCA Protein uniprot:P17252 "" ensembl:ENSG00000154229 ncbigene:5578 hgnc.symbol:PRKCA uniprot:J3KN97;uniprot:L7RSM7;uniprot:P17252;uniprot:J3KRN5
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31 changes: 16 additions & 15 deletions _pathways/WP5200.md
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Expand Up @@ -4,22 +4,22 @@ annotations:
parent: animal cell
type: Cell Type Ontology
value: neuron
- id: CL:0000598
parent: animal cell
type: Cell Type Ontology
value: pyramidal neuron
- id: DOID:0080422
parent: genetic disease
type: Disease Ontology
value: Dravet syndrome
- id: CL:0011005
parent: animal cell
type: Cell Type Ontology
value: GABAergic interneuron
- id: PW:0000013
parent: disease pathway
type: Pathway Ontology
value: disease pathway
- id: CL:0011005
parent: animal cell
type: Cell Type Ontology
value: GABAergic interneuron
- id: CL:0000598
parent: animal cell
type: Cell Type Ontology
value: pyramidal neuron
authors:
- MiriamBabukhian
- Leadoerner
Expand All @@ -31,21 +31,21 @@ citedin: ''
communities:
- RareDiseases
description: 'Dravet syndrome is a rare form of epilepsy. Between 70% and 80% of patients
carry sodium channel α1 subunit gene (SCN1A) loss of function mutations. Truncating
carry sodium channel α1 subunit gene (SCN1A) loss of function mutations. Truncating
mutations (early stop codon) account for about 40% and have a significant correlation
with an earlier age of seizures onset. The mutations lead to haploinsufficiency
of the voltage-gated sodium channel α subunit NaV1.1 in the of GABAergic inhibitory
of the voltage-gated sodium channel α subunit NaV1.1 in the of GABAergic inhibitory
interneurons in the brain. Mutations in other genes like KCNA1, CHD2, PCDH19 and
STXBP1 can also lead to Dravet syndrome. '
last-edited: 2024-07-23
last-edited: 2024-11-08
ndex: null
organisms:
- Homo sapiens
redirect_from:
- /index.php/Pathway:WP5200
- /instance/WP5200
- /instance/WP5200_r134566
revision: r134566
- /instance/WP5200_r135747
revision: r135747
schema-jsonld:
- '@context': https://schema.org/
'@id': https://wikipathways.github.io/pathways/WP5200.html
Expand All @@ -54,10 +54,10 @@ schema-jsonld:
'@type': Organization
name: WikiPathways
description: 'Dravet syndrome is a rare form of epilepsy. Between 70% and 80% of
patients carry sodium channel α1 subunit gene (SCN1A) loss of function mutations.
patients carry sodium channel α1 subunit gene (SCN1A) loss of function mutations.
Truncating mutations (early stop codon) account for about 40% and have a significant
correlation with an earlier age of seizures onset. The mutations lead to haploinsufficiency
of the voltage-gated sodium channel α subunit NaV1.1 in the of GABAergic inhibitory
of the voltage-gated sodium channel α subunit NaV1.1 in the of GABAergic inhibitory
interneurons in the brain. Mutations in other genes like KCNA1, CHD2, PCDH19
and STXBP1 can also lead to Dravet syndrome. '
keywords:
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- SCN2B
- SCN3B
- SCN4B
- SNTA1
- STXBP1
- Syntaxin
- TNF
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