Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

JOSS Paper #567

Merged
merged 22 commits into from
Jun 24, 2024
Merged
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
Binary file added docs/paper/figures/figure1.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file added docs/paper/figures/figure2.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file added docs/paper/figures/figure3.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
395 changes: 395 additions & 0 deletions docs/paper/paper.bib
Original file line number Diff line number Diff line change
@@ -0,0 +1,395 @@
@article{Golaz:2022,
author = {Golaz, Jean-Christophe
and Van Roekel, Luke P.
and Zheng, Xue
and Roberts, Andrew F.
and Wolfe, Jonathan D.
and Lin, Wuyin
and Bradley, Andrew M.
and Tang, Qi
and Maltrud, Mathew E.
and Forsyth, Ryan M.
and Zhang, Chengzhu
and Zhou, Tian
and Zhang, Kai
and Zender, Charles S.
and Wu, Mingxuan
and Wang, Hailong
and Turner, Adrian K.
and Singh, Balwinder
and Richter, Jadwiga H.
and Qin, Yi
and Petersen, Mark R.
and Mametjanov, Azamat
and Ma, Po-Lun
and Larson, Vincent E.
and Krishna, Jayesh
and Keen, Noel D.
and Jeffery, Nicole
and Hunke, Elizabeth C.
and Hannah, Walter M.
and Guba, Oksana
and Griffin, Brian M.
and Feng, Yan
and Engwirda, Darren
and Di Vittorio, Alan V.
and Dang, Cheng
and Conlon, LeAnn M.
and Chen, Chih-Chieh-Jack
and Brunke, Michael A.
and Bisht, Gautam
and Benedict, James J.
and Asay-Davis, Xylar S.
and Zhang, Yuying
and Zhang, Meng
and Zeng, Xubin
and Xie, Shaocheng
and Wolfram, Phillip J.
and Vo, Tom
and Veneziani, Milena
and Tesfa, Teklu K.
and Sreepathi, Sarat
and Salinger, Andrew G.
and Reeves Eyre, J. E. Jack
and Prather, Michael J.
and Mahajan, Salil
and Li, Qing
and Jones, Philip W.
and Jacob, Robert L.
and Huebler, Gunther W.
and Huang, Xianglei
and Hillman, Benjamin R.
and Harrop, Bryce E.
and Foucar, James G.
and Fang, Yilin
and Comeau, Darin S.
and Caldwell, Peter M.
and Bartoletti, Tony
and Balaguru, Karthik
and Taylor, Mark A.
and McCoy, Renata B.
and Leung, L. Ruby
and Bader, David C.},
title = {The DOE E3SM Model Version 2: Overview of the Physical Model and Initial Model Evaluation},
journal = {Journal of Advances in Modeling Earth Systems},
volume = {14},
number = {12},
pages = {e2022MS003156},
keywords = {DOE E3SM, climate modeling},
doi = {10.1029/2022MS003156},
url = {https://agupubs.onlinelibrary.wiley.com/doi/abs/10.1029/2022MS003156},
eprint = {https://agupubs.onlinelibrary.wiley.com/doi/pdf/10.1029/2022MS003156},
note = {e2022MS003156 2022MS003156},
year = {2022}
}

@article{Hassell:2017,
title = {A data model of the Climate and Forecast metadata conventions (CF-1.6) with a software implementation (cf-python v2.1)},
author = {Hassell, D.
and Gregory, J.
and Blower, J.
and Lawrence, B. N.
and Taylor, K. E.},
doi = {10.5194/gmd-10-4619-2017},
journal = {Geoscientific Model Development},
number = {12},
pages = {4619-4646},
url = {https://gmd.copernicus.org/articles/10/4619/2017/},
volume = {10},
year = {2017}
}

@article{Hoyer:2017,
title = {xarray: {N}-{D} labeled {Arrays} and {Datasets} in {Python}},
author = {Hoyer, Stephan and Hamman, Joseph J.},
doi = {10.5334/jors.148},
issn = {2049-9647},
journal = {Journal of Open Research Software},
language = {en},
month = apr,
pages = {10},
shorttitle = {xarray},
url = {http://openresearchsoftware.metajnl.com/articles/10.5334/jors.148/},
urldate = {2019-07-02},
volume = {5},
year = {2017}
}

@article{Lee:2023,
author = {Lee, J.
and Gleckler, P. J.
and Ahn, M.-S.
and Ordonez, A.
and Ullrich, P. A.
and Sperber, K. R.
and Taylor, K. E.
and Planton, Y. Y.
and Guilyardi, E.
and Durack, P.
and Bonfils, C.
and Zelinka, M. D.
and Chao, L.-W.
and Dong, B.
and Doutriaux, C.
and Zhang, C.
and Vo, T.
and Boutte, J.
and Wehner, M. F.
and Pendergrass, A. G.
and Kim, D.
and Xue, Z.
and Wittenberg, A. T.
and Krasting, J.},
title = {Objective Evaluation of Earth System Models: PCMDI Metrics Package (PMP) version 3},
journal = {EGUsphere},
volume = {2023},
year = {2023},
pages = {1-48},
url = {https://egusphere.copernicus.org/preprints/2023/egusphere-2023-2720/},
doi = {10.5194/egusphere-2023-2720}
}

@article{Po-Chedley:2022,
author = {Stephen Po-Chedley
and John T. Fasullo
and Nicholas Siler
and Zachary M. Labe
and Elizabeth A. Barnes
and Céline J. W. Bonfils
and Benjamin D. Santer},
title = {Internal variability and forcing influence model–satellite differences in the rate of tropical tropospheric warming},
journal = {Proceedings of the National Academy of Sciences},
volume = {119},
number = {47},
pages = {e2209431119},
year = {2022},
doi = {10.1073/pnas.2209431119},
url = {https://www.pnas.org/doi/abs/10.1073/pnas.2209431119},
EPRINT = {https://www.pnas.org/doi/pdf/10.1073/pnas.2209431119},
}

@article{Williams:2009,
author = {Williams, Dean N.
and Doutriaux, Charles M.
and Drach, Robert S.
and Mccoy, Renata B.},
booktitle = {2009 IEEE International Conference on Data Mining Workshops},
title = {The Flexible Climate Data Analysis Tools (CDAT) for Multi-model Climate Simulation Data},
year = {2009},
volume = {},
number = {},
pages = {254-261},
doi = {10.1109/ICDMW.2009.64}
}

@article{Williams:2014,
title = {Visualization and Analysis Tools for Ultrascale Climate Data},
author = {Williams, D. N.},
doi = {10.1002/2014EO420002},
journal = {Advanced Earth and Space Sciences},
number = {42},
pages = {377-378},
url = {https://agupubs.onlinelibrary.wiley.com/doi/10.1002/2014EO420002},
volume = {95},
year = {2014}
}

@article{Zhang:2022,
author = {Zhang, C.
and Golaz, J.-C.
and Forsyth, R.
and Vo, T.
and Xie, S.
and Shaheen, Z.
and Potter, G. L.
and Asay-Davis, X. S.
and Zender, C. S.
and Lin, W.
and Chen, C.-C.
and Terai, C. R.
and Mahajan, S.
and Zhou, T.
and Balaguru, K.
and Tang, Q.
and Tao, C.
and Zhang, Y.
and Emmenegger, T.
and Burrows, S.
and Ullrich, P. A.},
title = {The E3SM Diagnostics Package (E3SM Diags v2.7): a Python-based diagnostics package for Earth system model evaluation},
journal = {Geoscientific Model Development},
volume = {15},
year = {2022},
number = {24},
pages = {9031-9056},
url = {https://gmd.copernicus.org/articles/15/9031/2022/},
doi = {10.5194/gmd-15-9031-2022}
}

@manual{dask:2016,
title = {Dask: Library for dynamic task scheduling},
author = {Dask-Development-Team},
year = {2016},
url = {https://dask.org},
}

@software{cdat,
author = {Charles Doutriaux
and Denis Nadeau
and Scott Wittenburg
and Dan Lipsa
and Lina Muryanto
and Aashish Chaudhary
and Dean N. Williams},
title = {CDAT/cdat: CDAT 8.1},
month = mar,
year = 2019,
publisher = {Zenodo},
version = {v8.1},
doi = {10.5281/zenodo.2586088},
url = {https://doi.org/10.5281/zenodo.2586088}
}

@software{cf-xarray,
author = {Cherian, Deepak
and Almansi, Mattia
and Bourgault, Pascal
and Thyng, Kristen
and Thielen, Jonathan
and Magin, Justus
and Aoun, Abel
and Buntemeyer, Lars
and Caneill, Romain
and Davis, Luke
and Fernandes, Filipe
and Hauser, Matthias
and Heerdegen, Aidan
and Kent, Julia
and Mankoff, Ken
and Müller, Sebastian
and Schupfner, Martin
and Vo, Tom
and Haëck, Clément},
title = {cf\_xarray},
month = oct,
year = 2023,
publisher = {Zenodo},
version = {v0.8.5},
doi = {10.5281/zenodo.10038784},
url = {https://doi.org/10.5281/zenodo.10038784}
}

@software{e3sm-diags,
author = {Jill Chengzhu Zhang
and Zeshawn Shaheen
and Tom Vo
and Ryan Forsyth
and Golaz
and Xylar Asay-Davis
and Naser Mahfouz
and Andrew M. Bradley
and Charles Doutriaux},
title = {E3SM-Project/e3sm\_diags: v2.9.0},
month = sep,
year = 2023,
publisher = {Zenodo},
version = {v2.9.0},
doi = {10.5281/zenodo.8339034},
url = {https://doi.org/10.5281/zenodo.8339034}
}

@software{e3sm-unified,
author = {Asay-Davis, Xylar},
title = {E3SM-Unified: A metapackage for a unified anaconda environment for analyzing results from the Energy Exascale Earth System Model (E3SM)},
month = dec,
year = 2023,
publisher = {GitHub},
version = {v1.9.1},
url = {https://github.com/E3SM-Project/e3sm-unified}
}

@software{pcmdi-metrics,
author = {Lee, Jiwoo
and Gleckler, Peter
and Ordonez, Ana
and Ahn, Min-Seop
and Ullrich, Paul
and Vo, Tom
and Boutte, Jason
and Doutriaux, Charles
and Durack, Paul
and Shaheen, Zeshawn
and Muryanto, Lina
and Painter, Jeffrey
and Krasting, John},
title = {PCMDI/pcmdi\_metrics: PMP Version 3.1.2},
month = nov,
year = 2023,
publisher = {Zenodo},
version = {v3.1.2},
doi = {10.5281/zenodo.10236521},
url = {https://doi.org/10.5281/zenodo.10236521}
}

@software{xesmf,
author = {Jiawei Zhuang
and Raphael Dussin
and David Huard
and Pascal Bourgault
and Anderson Banihirwe
and Stephane Raynaud
and Brewster Malevich
and Martin Schupfner
and Filipe
and Sam Levang
and Charles Gauthier
and André Jüling
and Mattia Almansi
and Richardscottoz
and Rondeaug
and Stephan Rasp
and Trevor James Smith
and Jemma Stachelek
and Matthew Plough
and Pierre
and Ray Bell
and Romain Caneill
and Xianxiang Li},
title = {pangeo-data/xESMF: v0.8.2},
month = sep,
year = 2023,
publisher = {Zenodo},
version = {v0.8.2},
doi = {10.5281/zenodo.8356796},
url = {https://doi.org/10.5281/zenodo.8356796}
}

@software{xgcm,
author = {Abernathey, Ryan P.
and Busecke, Julius J. M.
and Smith, Timothy Andrew
and Deauna, Josephine Dianne
and Banihirwe, Anderson
and Nicholas, Thomas
and Fernandes, Filipe
and James, Bourbeau
and Dussin, Raphael
and Cherian, Deepak A.
and Caneill, Romain
and Sinha, Anirban
and Uieda, Leonardo
and Rath, Willi
and Balwada, Dhruv
and Constantinou, Navid C.
and Ponte, Aurélien
and Zhou, Yuxin
and Uchida, Takaya
and Thielen, Jon},
title = {xgcm},
month = nov,
year = 2022,
publisher = {Zenodo},
version = {v0.8.1},
doi = {10.5281/zenodo.7348619},
url = {https://doi.org/10.5281/zenodo.7348619}
}
Loading
Loading