VATAligner (Versatile Alignment Tool) is a fast and efficient multi-purpose sequence aligner. It supports the alignment of both short and long nucleotide sequences, as well as protein homology searches, offering a flexible solution for various sequence analysis needs.
- Supports both DNA and protein sequence alignments.
- High-performance alignment with multi-threading capabilities.
- Flexible input formats for FASTA/FASTQ sequences.
- Suitable for large-scale sequence analysis in genomics and protein.
VATAligner leverages multi-threading to accelerate the alignment process for large datasets.
For information on data preparation and access, please refer to the data_preparation/README.md file.
For a list of available options and command-line flags, refer to the detailed documentation in the src/README.md file.