added htslib through pkg-config

ylab-hi · Nov 20, 2024 · b2bc5f8 · b2bc5f8
1 parent 7362973
commit b2bc5f8
Showing 1 changed file with 7 additions and 0 deletions.
diff --git a/cli/CMakeLists.txt b/cli/CMakeLists.txt
@@ -28,14 +28,21 @@ CPMAddPackage(
         GIT_TAG v1.3.1
 )
 
+find_package(PkgConfig REQUIRED)
+pkg_check_modules(HTSLIB REQUIRED IMPORTED_TARGET htslib)
+
+
 file(GLOB GG_LIB_SOURCES "../src/*.cpp")
 file(GLOB GG_CLI_SOURCES "src/*.cpp")
 
 add_executable(genogrove_cli ${GG_LIB_SOURCES} ${GG_CLI_SOURCES})
 target_include_directories(genogrove_cli PUBLIC "${cxxopts_SOURCE_DIR}/include/") # cxxopts header files
 target_include_directories(genogrove_cli PUBLIC "${CMAKE_CURRENT_SOURCE_DIR}/../include/") # genogrove header files
+target_include_directories(genogrove_cli PUBLIC ${HTSLIB_INCLUDE_DIRS}) # htslib header files
 target_include_directories(genogrove_cli PUBLIC include) # cli header files
+
 target_link_libraries(genogrove_cli cxxopts zlibstatic)
+target_link_libraries(genogrove_cli ${HTSLIB_LIBRARIES}) # htslib libraries
 
 # set the output directory for the executable
 set_target_properties(genogrove_cli PROPERTIES