refactor: Add Python Binding layout and Update CMakeLists and project structure

[cauliyang]

• Refactor project structure to make the scope modular
• Add Python binding layout using nanobind
• Use CPM.cmake as Dependencies Manager
• Use spdlog as logger
• Use cxxopt as command line parser
• Make command line as Standalone
• Use https://github.com/TheLartians/PackageProject.cmake to package library
• Add .clang-format
• Add .cmake-format
• Use parameters -Wall -Wextra -Wnon-virtual-dtor -pedantic when building
• Use option e.g. GENOGROVE_BUILD_PYTHON to control building processing
• Add .gitignore
• Use SANITIZER
• Refactor CI
• Add python binding