Code for Trans-acting long non-coding RNA modulates long-range chromatin interactions associated with oncogenic MYC signaling

This repository contains the code used in the study "Trans-acting long non-coding RNA modulates long-range chromatin interactions associated with oncogenic MYC signaling."

The code is organized into the following sub-directories, each containing scripts for specific analyses performed during the research:

1. lncRNA_candidate

Contains scripts for the identification of candidate novel long non-coding RNAs (lncRNAs).

2. coding_potential

Contains code for coding potential prediction of candidate lncRNAs.

3. DEG_for_PRAD_N_T_SU2C

Contains scripts for identifying differentially expressed genes (DEGs) in PRAD normal, and SU2C datasets.

4. igf1r_as1_network

Contains code for constructing the promoter-enhancer interaction network.

📚 Citation

Yang Y, Wang TY., Fry J., Li Y, et al. Trans-acting long non-coding RNA modulates long-range chromatin interactions associated with oncogenic MYC signaling.