Updated license headers

DessimozLab · Nov 25, 2024 · 0bbb6e9 · 0bbb6e9
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diff --git a/omamer/HOGParser.py b/omamer/HOGParser.py
@@ -2,6 +2,7 @@
     HOGPROP - Propagation of Gene Ontology (GO) annotations through
     Hierarchical Orthologous Groups (HOGs) from the OMA project.
 
+    (C) 2024 Nikolai Romashchenko <[email protected]>
     (C) 2015-2023 Alex Warwick Vesztrocy <[email protected]>
 
     This file is part of HOGPROP. It contains a module for parsing an

diff --git a/omamer/__init__.py b/omamer/__init__.py
@@ -1,6 +1,7 @@
 """
     OMAmer - tree-driven and alignment-free protein assignment to sub-families
 
+    (C) 2024 Nikolai Romashchenko <[email protected]>
     (C) 2022-2023 Alex Warwick Vesztrocy <[email protected]>
     (C) 2019-2021 Victor Rossier <[email protected]> and
                   Alex Warwick Vesztrocy <[email protected]>
@@ -24,6 +25,6 @@
 
 __packagename__ = "omamer"
 __version__ = "2.0.5"
-__copyright__ = "(C) 2019-{:d} Victor Rossier <[email protected]> and Alex Warwick Vesztrocy <[email protected]>".format(
+__copyright__ = "(C) 2019-{:d} Victor Rossier <[email protected]> and Alex Warwick Vesztrocy <[email protected]> and Nikolai Romashchenko <[email protected]>".format(
     date.today().year
 )
diff --git a/omamer/_clock.py b/omamer/_clock.py
@@ -1,3 +1,27 @@
+"""
+    OMAmer - tree-driven and alignment-free protein assignment to sub-families
+
+    (C) 2024 Nikolai Romashchenko <[email protected]>
+    (C) 2022-2023 Alex Warwick Vesztrocy <[email protected]>
+    (C) 2019-2021 Victor Rossier <[email protected]> and
+                  Alex Warwick Vesztrocy <[email protected]>
+
+    This file is part of OMAmer.
+
+    OMAmer is free software: you can redistribute it and/or modify
+    it under the terms of the GNU Lesser General Public License as published by
+    the Free Software Foundation, either version 3 of the License, or
+    (at your option) any later version.
+
+    OMAmer is distributed in the hope that it will be useful,
+    but WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+    GNU Lesser General Public License for more details.
+
+    You should have received a copy of the GNU Lesser General Public License
+    along with OMAmer. If not, see <http://www.gnu.org/licenses/>.
+"""
+
 import ctypes
 
 # Access the _PyTime_AsSecondsDouble and _PyTime_GetSystemClock functions from pythonapi

diff --git a/omamer/_runners.py b/omamer/_runners.py
@@ -1,6 +1,7 @@
 """
     OMAmer - tree-driven and alignment-free protein assignment to sub-families
 
+    (C) 2024 Nikolai Romashchenko <[email protected]>
     (C) 2022-2023 Alex Warwick Vesztrocy <[email protected]>
     (C) 2019-2021 Victor Rossier <[email protected]> and
                   Alex Warwick Vesztrocy <[email protected]>

diff --git a/omamer/_utils.py b/omamer/_utils.py
@@ -1,6 +1,7 @@
 """
     OMAmer - tree-driven and alignment-free protein assignment to sub-families
 
+    (C) 2024 Nikolai Romashchenko <[email protected]>
     (C) 2022-2023 Alex Warwick Vesztrocy <[email protected]>
     (C) 2019-2021 Victor Rossier <[email protected]> and
                   Alex Warwick Vesztrocy <[email protected]>

diff --git a/omamer/database.py b/omamer/database.py
@@ -1,6 +1,7 @@
 """
     OMAmer - tree-driven and alignment-free protein assignment to sub-families
 
+    (C) 2024 Nikolai Romashchenko <[email protected]>
     (C) 2022-2023 Alex Warwick Vesztrocy <[email protected]>
     (C) 2019-2021 Victor Rossier <[email protected]> and
                   Alex Warwick Vesztrocy <[email protected]>

diff --git a/omamer/hierarchy.py b/omamer/hierarchy.py
@@ -1,6 +1,7 @@
 """
     OMAmer - tree-driven and alignment-free protein assignment to sub-families
 
+    (C) 2024 Nikolai Romashchenko <[email protected]>
     (C) 2022-2023 Alex Warwick Vesztrocy <[email protected]>
     (C) 2019-2021 Victor Rossier <[email protected]> and
                   Alex Warwick Vesztrocy <[email protected]>

diff --git a/omamer/index.py b/omamer/index.py
@@ -1,6 +1,7 @@
 """
     OMAmer - tree-driven and alignment-free protein assignment to sub-families
 
+    (C) 2024 Nikolai Romashchenko <[email protected]>
     (C) 2022-2023 Alex Warwick Vesztrocy <[email protected]>
     (C) 2019-2021 Victor Rossier <[email protected]> and
                   Alex Warwick Vesztrocy <[email protected]>

diff --git a/omamer/main.py b/omamer/main.py
@@ -1,6 +1,7 @@
 """
     OMAmer - tree-driven and alignment-free protein assignment to sub-families
 
+    (C) 2024 Nikolai Romashchenko <[email protected]>
     (C) 2022-2023 Alex Warwick Vesztrocy <[email protected]>
     (C) 2019-2021 Victor Rossier <[email protected]> and
                   Alex Warwick Vesztrocy <[email protected]>

diff --git a/omamer/merge_search.py b/omamer/merge_search.py
@@ -1,6 +1,7 @@
 """
     OMAmer - tree-driven and alignment-free protein assignment to sub-families
 
+    (C) 2024 Nikolai Romashchenko <[email protected]>
     (C) 2022-2023 Alex Warwick Vesztrocy <[email protected]>
     (C) 2019-2021 Victor Rossier <[email protected]> and
                   Alex Warwick Vesztrocy <[email protected]>

diff --git a/omamer/results_reader.py b/omamer/results_reader.py
@@ -1,6 +1,7 @@
 """
     OMAmer - tree-driven and alignment-free protein assignment to sub-families
 
+    (C) 2024 Nikolai Romashchenko <[email protected]>
     (C) 2022-2023 Alex Warwick Vesztrocy <[email protected]>
     (C) 2019-2021 Victor Rossier <[email protected]> and
                   Alex Warwick Vesztrocy <[email protected]>

diff --git a/omamer/sequence_buffer.py b/omamer/sequence_buffer.py
@@ -1,6 +1,7 @@
 """
     OMAmer - tree-driven and alignment-free protein assignment to sub-families
 
+    (C) 2024 Nikolai Romashchenko <[email protected]>
     (C) 2022-2023 Alex Warwick Vesztrocy <[email protected]>
     (C) 2019-2021 Victor Rossier <[email protected]> and
                   Alex Warwick Vesztrocy <[email protected]>

diff --git a/omamer/sequence_reader.py b/omamer/sequence_reader.py
@@ -1,6 +1,7 @@
 """
     OMAmer - tree-driven and alignment-free protein assignment to sub-families
 
+    (C) 2024 Nikolai Romashchenko <[email protected]>
     (C) 2022-2023 Alex Warwick Vesztrocy <[email protected]>
     (C) 2019-2021 Victor Rossier <[email protected]> and
                   Alex Warwick Vesztrocy <[email protected]>

diff --git a/setup.py b/setup.py
@@ -1,6 +1,7 @@
 """
     OMAmer - tree-driven and alignment-free protein assignment to sub-families
 
+    (C) 2024 Nikolai Romashchenko <[email protected]>
     (C) 2022-2023 Alex Warwick Vesztrocy <[email protected]>
     (C) 2019-2021 Victor Rossier <[email protected]> and
                   Alex Warwick Vesztrocy <[email protected]>