This code supplied the R code, JAGS models, and model output used in the main text and supplementary materials of DiRenzo et al. 2017, published in Methods in Ecology and Evolution.
For amphibian data used in the main text, see the Dryad data repository: doi:10.5061/dryad.p1006
If you will be using this code, please cite this github repository: DOI:10.5281/zenodo.840132
Please cite this work appropriately using: DiRenzo, Graziella; Grant, Evan; Longo, Ana; Che-Castaldo, Christian; Zamudio, Kelly; Lips, Karen. 2017. Imperfect pathogen detection from non-invasive skin swabs biases disease inference. Methods in Ecology & Evolution.