3.3.0

Added threading to tiddit

3.1.0

Added --skip_assembly parameter to disable local assembly

3.0.0

TIDDIT reimplemented in python

2.12.1

Removed the % from the TIDDIT help menu

2.12.0

TIDDIT is now faster on genomes having a large number of contigs (such as GRCH38)

2.11.0

TIDIDT now accept streamed bam input

"cram" support: by wrapping around sammtools and streaming

I have silenced some warning messages on GC correction of "empty" contigs

2.8.1

The discordant pair size cutoff is not 99.9 percentile

Minor fixes to the genotyping of SV

2.8.0

I made a proper error message for non-supported file input

The discordant pair size limit is now determined using percentile.

I added tagged singularity recipes

The default read quality treshold is now 5 mapq

2.7.1

Removed the pysam dependency

The span coverage is now computed while extracting the signals from the bam file

2.7.0

Lower memory usage: should not consume more than 5GB

python3 support