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@OHDSI

Observational Health Data Sciences and Informatics

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  1. CommonDataModel CommonDataModel Public

    Definition and DDLs for the OMOP Common Data Model (CDM)

    HTML 912 457

  2. Vocabulary-v5.0 Vocabulary-v5.0 Public

    Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.

    PLpgSQL 229 75

  3. Atlas Atlas Public

    ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data

    JavaScript 277 139

  4. Cyclops Cyclops Public

    Cyclops (Cyclic coordinate descent for logistic, Poisson and survival analysis) is an R package for performing large scale regularized regressions.

    C++ 39 33

  5. CohortMethod CohortMethod Public

    An R package for performing new-user cohort studies in an observational database in the OMOP Common Data Model.

    R 82 60

  6. PatientLevelPrediction PatientLevelPrediction Public

    An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.

    HTML 189 90

Repositories

Showing 10 of 319 repositories
  • dbt-synthea Public

    [Under development] A dbt ETL project to convert a Synthea synthetic data set into the OMOP CDM

    OHDSI/dbt-synthea’s past year of commit activity
    Python 21 Apache-2.0 8 19 2 Updated Feb 1, 2025
  • PhenotypeR Public
    OHDSI/PhenotypeR’s past year of commit activity
    R 2 Apache-2.0 0 32 1 Updated Jan 31, 2025
  • OhdsiReportGenerator Public

    Code to extract data from the OHDSI results structure and generate plots, presentations and reports

    OHDSI/OhdsiReportGenerator’s past year of commit activity
    R 0 0 0 0 Updated Jan 31, 2025
  • WebAPI Public

    OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications

    OHDSI/WebAPI’s past year of commit activity
    Java 135 Apache-2.0 168 131 (1 issue needs help) 24 Updated Jan 31, 2025
  • AresIndexer Public

    R package that creates the index and relevant files for an Ares deployment.

    OHDSI/AresIndexer’s past year of commit activity
    R 1 Apache-2.0 5 16 0 Updated Jan 31, 2025
  • context Public

    A python library to create knowledge graphs for context-aware prediction modeling and more.

    OHDSI/context’s past year of commit activity
    Python 0 0 1 0 Updated Jan 31, 2025
  • Vocabulary-v5.0 Public

    Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.

    OHDSI/Vocabulary-v5.0’s past year of commit activity
    PLpgSQL 229 Unlicense 75 223 12 Updated Jan 31, 2025
  • ArachneExecutionEngine Public

    Arachne Execution Engine is a component used to execute remote SQL or R code. It is used by both Arachne Data Node as well as WebAPI

    OHDSI/ArachneExecutionEngine’s past year of commit activity
    PLpgSQL 8 8 1 1 Updated Jan 31, 2025
  • ETL-LambdaBuilder Public

    CDM Builder leveraging AWS Lambda

    OHDSI/ETL-LambdaBuilder’s past year of commit activity
    C# 15 Apache-2.0 15 0 1 Updated Jan 31, 2025
  • drat Public

    drat repository for OHDSI R packages

    OHDSI/drat’s past year of commit activity
    5 7 0 0 Updated Jan 31, 2025

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