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@OHDSI Observational Health Data Sciences and Informatics

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    319 repositories

    • Strategus

      Public
      An R package for coordinating and executing analytics using HADES modules
      R
      •11•6•18•5•Updated Feb 7, 2025Feb 7, 2025

    • ClinicalCharacteristics

      Public
      [under development] table shell approach to OMOP characterization
      R
      •
      Apache License 2.0
      •1•0•11•0•Updated Feb 7, 2025Feb 7, 2025

    • WebAPI

      Public
      OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications
      Java
      •
      Apache License 2.0
      •168•135•130•25•Updated Feb 7, 2025Feb 7, 2025

    • Atlas

      Public
      ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data
      JavaScript
      •
      Apache License 2.0
      •140•277•213•22•Updated Feb 7, 2025Feb 7, 2025

    • OmopSketch

      Public
      R
      •
      Apache License 2.0
      •0•1•6•1•Updated Feb 7, 2025Feb 7, 2025

    • omock

      Public
      HTML
      •
      Apache License 2.0
      •1•2•1•0•Updated Feb 7, 2025Feb 7, 2025

    • Vocabulary-v5.0

      Public
      Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.
      PLpgSQL
      •
      The Unlicense
      •75•231•223•12•Updated Feb 7, 2025Feb 7, 2025

    • context

      Public
      A python library to create knowledge graphs for context-aware prediction modeling and more.
      Python
      •0•0•2•0•Updated Feb 7, 2025Feb 7, 2025

    • EmpiricalCalibration

      Public
      An R package for performing empirical calibration of observational study estimates
      hades
      R
      •9•10•2•0•Updated Feb 7, 2025Feb 7, 2025

    • GIS

      Public
      R
      •
      Apache License 2.0
      •9•11•70•2•Updated Feb 6, 2025Feb 6, 2025

    • OhdsiReportGenerator

      Public
      Code to extract data from the OHDSI results structure and generate plots, presentations and reports
      R
      •0•0•0•0•Updated Feb 6, 2025Feb 6, 2025

    • Broadsea

      Public
      Broadsea deploys the core OHDSI technology stack (Atlas & R Hades), using cross-platform Docker container technology.
      R
      •
      Apache License 2.0
      •63•76•46•5•Updated Feb 6, 2025Feb 6, 2025

    • circe-be

      Public
      CIRCE is a cohort definition and syntax compiler tool for OMOP CDMv5
      cohort-definitions
      Java
      •
      Apache License 2.0
      •13•9•6•7•Updated Feb 6, 2025Feb 6, 2025

    • Ares

      Public
      A Research Exploration System
      Vue
      •
      Apache License 2.0
      •7•12•35•2•Updated Feb 6, 2025Feb 6, 2025

    • PatientLevelPrediction

      Public
      An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.
      hades
      R
      •90•189•26•1•Updated Feb 6, 2025Feb 6, 2025

    • drat

      Public
      drat repository for OHDSI R packages
      7•5•0•0•Updated Feb 6, 2025Feb 6, 2025

    • PhenotypeR

      Public
      R
      •
      Apache License 2.0
      •0•2•27•0•Updated Feb 5, 2025Feb 5, 2025

    • ETL-LambdaBuilder

      Public
      CDM Builder leveraging AWS Lambda
      C#
      •
      Apache License 2.0
      •15•15•0•2•Updated Feb 5, 2025Feb 5, 2025

    • CohortConstructor

      Public
      R
      •
      Apache License 2.0
      •0•1•42•3•Updated Feb 4, 2025Feb 4, 2025

    • SelfControlledCaseSeries

      Public
      An R package for performing Self-Controlled Case Series (SCCS) analyses in an observational database in the OMOP Common Data Model.
      hades
      R
      •8•13•11•0•Updated Feb 4, 2025Feb 4, 2025

    • Tutorial-Hades

      Public
      Materials used for tutorials on HADES
      JavaScript
      •3•4•1•0•Updated Feb 4, 2025Feb 4, 2025

    • Arachne

      Public
      Arachne Data Node web application
      TypeScript
      •
      Apache License 2.0
      •1•1•10•1•Updated Feb 3, 2025Feb 3, 2025

    • AresIndexer

      Public
      R package that creates the index and relevant files for an Ares deployment.
      R
      •
      Apache License 2.0
      •5•1•16•0•Updated Feb 3, 2025Feb 3, 2025

    • MethodEvaluation

      Public
      An R package for the evaluation of estimation methods
      hades
      R
      •6•8•3•0•Updated Feb 3, 2025Feb 3, 2025

    • WhiteRabbit

      Public
      WhiteRabbit is a small application that can be used to analyse the structure and contents of a database as preparation for designing an ETL. It comes with RabbitInAHat, an application for interactive design of an ETL to the OMOP Common Data Model with the help of the the scan report generated by White Rabbit.
      Java
      •
      Apache License 2.0
      •92•185•108•6•Updated Feb 1, 2025Feb 1, 2025

    • dbt-synthea

      Public
      [Under development] A dbt ETL project to convert a Synthea synthetic data set into the OMOP CDM
      Python
      •
      Apache License 2.0
      •8•22•17•1•Updated Feb 1, 2025Feb 1, 2025

    • ArachneExecutionEngine

      Public
      Arachne Execution Engine is a component used to execute remote SQL or R code. It is used by both Arachne Data Node as well as WebAPI
      PLpgSQL
      •8•8•1•1•Updated Jan 31, 2025Jan 31, 2025

    • DatabaseConnector

      Public
      An R package for connecting to databases using JDBC.
      hades
      R
      •84•56•33•2•Updated Jan 31, 2025Jan 31, 2025

    • ImageWG

      Public
      Repository for medical image working group
      Rich Text Format
      •
      Apache License 2.0
      •4•8•5•0•Updated Jan 30, 2025Jan 30, 2025

    • SqlRender

      Public
      This is an R package and Java library for rendering parameterized SQL, and translating it to different SQL dialects.
      hades
      R
      •
      Other
      •80•82•11•0•Updated Jan 30, 2025Jan 30, 2025