KAT V1.0.5

Contains both changed for V1.0.4 which was only release internally at TGAC and V1.0.5. Details below

V1.0.5 - 28th April 2014

Removed call to auto configure when running the autogen.sh script.

Fixed issue where title could not be overriden by the user in the plotting
tools.

Changed short option name for the "list" option in spectra-mx plot tool to
'c'. This is to avoid a conflict with the "title" option.

Provided a more descriptive error message if the user enters a malformed
value for the "list" option in the spectra-mx tool.

Removed call to set the size ratio to 1 in the spectra-mx tool

V1.0.4 (internal release) - 1st April 2014

Dropped autoconf version to 2.59 to allow KAT to run in more environments.

Changed floats to doubles in sect. Previously, we may have got imprecise
mean coverage estimates when using really big sequences, such as whole
chromosome length.

Fixed spectra-cn issue, where we were not including all high copy kmers in a
final band of the spectra-cn plot.