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ADD: trac from classo - individual w Classo #16

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merged 30 commits into from
May 23, 2024
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@adamovanja adamovanja commented May 21, 2024

this PR adds:

  • trac model option from classo (which requires taxonomy + phylogeny) with Classo

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codecov bot commented May 21, 2024

Codecov Report

Attention: Patch coverage is 72.82609% with 75 lines in your changes are missing coverage. Please review.

Project coverage is 64.53%. Comparing base (dd7406d) to head (139100a).

Current head 139100a differs from pull request most recent head 378d4ad

Please upload reports for the commit 378d4ad to get more accurate results.

Files Patch % Lines
q2_ritme/model_space/_model_trac_calc.py 16.66% 20 Missing ⚠️
q2_ritme/process_data.py 32.00% 16 Missing and 1 partial ⚠️
q2_ritme/model_space/static_trainables.py 66.66% 13 Missing ⚠️
q2_ritme/evaluate_models.py 0.00% 10 Missing ⚠️
q2_ritme/feature_space/_process_trac_specific.py 88.70% 6 Missing and 1 partial ⚠️
q2_ritme/tune_models.py 0.00% 4 Missing ⚠️
q2_ritme/eval_best_trial_overall.py 0.00% 3 Missing ⚠️
q2_ritme/run_n_eval_tune.py 0.00% 1 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main      #16      +/-   ##
==========================================
+ Coverage   62.71%   64.53%   +1.81%     
==========================================
  Files          17       19       +2     
  Lines        1046     1297     +251     
  Branches       94      113      +19     
==========================================
+ Hits          656      837     +181     
- Misses        385      453      +68     
- Partials        5        7       +2     

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@adamovanja adamovanja changed the title ADD: trac from classo individual ADD: trac from classo - individual w Classo May 23, 2024
@adamovanja adamovanja merged commit 3751aaa into main May 23, 2024
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@adamovanja adamovanja deleted the add_trac_classo_indv branch August 14, 2024 16:56
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