Initial moves to OpenAPI v3

Makefile

@@ -0,0 +1,50 @@
+# helper commands for keeping the language directories in sync
+
+# note: "help" MUST be the first target in the file,
+# when the user types "make" they should get help info
+help:
+	@echo ""
+	@echo "Helper commands for AIRR Standards repository"
+	@echo ""
+	@echo "make gen-v2       -- Generate OpenAPI V2 spec from the V3 spec"
+	@echo "make docs         -- Build documentation"
+	@echo "make lang-copy    -- Copy spec files to language directories"
+	@echo "make data-copy    -- Copy test data files to language directories"
+	@echo "make checks       -- Run consistency checks on spec files"
+	@echo "make tests        -- Run all language test suites"
+	@echo "make python-tests -- Run Python test suite"
+	@echo "make r-tests      -- Run R test suite"
+	@echo "make js-tests     -- Run Javascript test suite"
+	@echo ""
+
+gen-v2:
+	@echo "Not implemented"
+
+lang-copy:
+	@echo "Copying specs to language directories"
+	cp specs/airr-schema.yaml lang/python/airr/specs
+	cp specs/airr-schema-openapi3.yaml lang/python/airr/specs
+	cp specs/airr-schema.yaml lang/R/inst/extdata
+	cp specs/airr-schema-openapi3.yaml lang/R/inst/extdata
+#	cp specs/airr-schema.yaml lang/js/
+#	cp specs/airr-schema-openapi3.yaml lang/js/
+
+data-copy:
+	@echo "Not implemented"
+
+checks:
+	@echo "Running consistency checks on spec files"
+	python3 tests/check-consistency-formats.py
+
+tests: python-tests r-tests js-tests
+
+python-tests:
+	@echo "Running Python test suite"
+	cd lang/python; python3 -m unittest discover
+
+r-tests:
+	@echo "Running R test suite"
+	cd lang/R; R -e "library(devtools); test()"
+
+js-tests:
+	@echo "Running Javascript test suite"