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Various updates to ICD 11 prefix record #1352

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Jan 11, 2025
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1 change: 0 additions & 1 deletion exports/alignment/biolink.tsv
Original file line number Diff line number Diff line change
Expand Up @@ -7,7 +7,6 @@ DOID-PROPERTY http://purl.obolibrary.org/obo/doid#$1 False True
gff3 https://github.com/The-Sequence-Ontology/Specifications/blob/master/gff3.md#$1 False False
GOP http://purl.obolibrary.org/obo/go#$1 False True
gtpo https://rdf.guidetopharmacology.org/ns/gtpo#$1 False False
icd11.foundation http://id.who.int/icd/entity/$1 False False
NBO-PROPERTY http://purl.obolibrary.org/obo/nbo#$1 False True
NCIT-OBO http://purl.obolibrary.org/obo/ncit#$1 False True
PHARMGKB.VARIANT https://www.pharmgkb.org/variant/$1 False False
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25 changes: 18 additions & 7 deletions src/bioregistry/data/bioregistry.json
Original file line number Diff line number Diff line change
Expand Up @@ -53796,17 +53796,25 @@
"biolink": {
"is_identifiers": false,
"is_obo": false,
"prefix": "icd11",
"prefix": "icd11.foundation",
"uri_format": "http://id.who.int/icd/entity/$1"
},
"comment": "The codes, such as RA00.0, need their own namespace.",
"comment": "Clinical codes from an ICD-11 linearization (a structured subset of the ICD-11 Foundation tailored for specific use cases, such as morbidity or mortality coding), such as RA00.0, have their own namespace (icd11.code).",
"contributor": {
"email": "[email protected]",
"github": "cthoyt",
"name": "Charles Tapley Hoyt",
"orcid": "0000-0003-4423-4370"
},
"description": "Diagnostic tool for epidemiology, health management and clinical purposes, maintained by the World Health Organization (WHO). It provides a system of diagnostic codes for classifying diseases, including nuanced classifications of a wide variety of signs, symptoms, abnormal findings, complaints, social circumstances, and external causes of injury or disease.",
"contributor_extras": [
{
"email": "[email protected]",
"github": "matentzn",
"name": "Nicolas Matentzoglu",
"orcid": "0000-0002-7356-1779"
}
],
"description": "The ICD-11 Foundation is the comprehensive base layer of the International Classification of Diseases, encompassing all diagnostic concepts, definitions, and semantic relationships, designed for flexibility and adaptability across various use cases, including research, ontology development, and detailed health data analysis.",
"example": "402558626",
"fairsharing": {
"abbreviation": "ICD 11",
Expand Down Expand Up @@ -53856,13 +53864,13 @@
},
"license": "CC-BY-ND-3.0-IGO",
"mappings": {
"biolink": "icd11",
"biolink": "icd11.foundation",
"fairsharing": "FAIRsharing.97805c",
"hl7": "2.16.840.1.113883.6.347",
"integbio": "nbdc02556",
"wikidata": "P7807"
},
"name": "International Classification of Diseases, 11th Revision",
"name": "International Classification of Diseases, 11th Revision (Foundation Component)",
"providers": [
{
"code": "api",
Expand All @@ -53886,11 +53894,14 @@
"uri_format": "https://icd.who.int/browse/2024-01/mms/en#$1"
}
],
"rdf_uri_format": "http://id.who.int/icd/entity/$1",
"references": [
"https://icd.who.int/docs/icd-api/license/"
],
"synonyms": [
"ICD-11"
"ICD-11",
"ICD11",
"icd11.foundation"
],
"uri_format": "https://icd.who.int/browse11/l-m/en#/http://id.who.int/icd/entity/$1",
"wikidata": {
Expand All @@ -53913,7 +53924,7 @@
"name": "Charles Tapley Hoyt",
"orcid": "0000-0003-4423-4370"
},
"description": "ICD11 codes, which typically appear in health records and can be used for post-coordination",
"description": "An ICD-11 code is a standardized alphanumeric identifier used to classify and document diseases, conditions, and health-related issues for global healthcare and statistical purposes.",
"example": "NA06.8D",
"example_extras": [
"CA71.2",
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1 change: 1 addition & 0 deletions src/bioregistry/data/contexts.json
Original file line number Diff line number Diff line change
Expand Up @@ -31,6 +31,7 @@
"prefix_remapping": {
"ensembl": "ENSEMBL",
"icd10": "ICD10WHO",
"icd11": "icd11.foundation",
"mesh": "MESH",
"omim.ps": "OMIMPS",
"orphanet.ordo": "Orphanet",
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