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Poetry build#152

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Merged

jcschaff merged 27 commits intodevbiosimulators/Biosimulators_utils:devfrom poetry-buildbiosimulators/Biosimulators_utils:poetry-buildCopy head branch name to clipboardSep 17, 2024

+5,507-195

Commits

Commits on Aug 30, 2024

• update CI from Ubuntu 20.04 to 22.04

  jcschaff

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  2e40d2d

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• use poetry as a python package manager

  jcschaff

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Commits on Sep 3, 2024

• add pytest and flake8

  jcschaff

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• fix flake8 invocation

  jcschaff

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• build all extras

  jcschaff

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• add all optional dependencies to build and loosen version restrictions

  jcschaff

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• temporarily remove rba and smoldyn as extras

  jcschaff

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• added flaky as a dev dependency

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Commits on Sep 4, 2024

• testing downgrade of bionetgen

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• Revert "testing downgrade of bionetgen"

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• Attempted hotfix to avoid docker api version error in singularity

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• replaced Capturer with contextlib.redirect_stdout() in unit test

  jcschaff

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• Attempted hotfix to avoid docker api version error in singularity

  

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  jcschaff

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• add back rba optional dependency

  jcschaff

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• fix test_ref_utils expected response from cross ref query

  jcschaff

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• add jsonschema dev dependency and pin libcellml

  jcschaff

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• build and test only for Python 3.8, 3.9, 3.10 (rbapy fails in 3.11)

  jcschaff

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• remove rba and add smoldyn, build for python 3.10 and 3.11

  jcschaff

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• add back rba

  jcschaff

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• support only Python 3.10, RBApy fails in 3.11 - uses 'rU' file mode.

  jcschaff

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• restore rba tests

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Commits on Sep 5, 2024

• Merge branch 'poetry-build' of https://github.com/biosimulators/Biosimulators_utils into poetry-build

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• build documentation and release to PyPI using Poetry

  jcschaff

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• Fixed "extras" for BSU

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• proper syntax for specifying any version of python3.10

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Commits on Sep 6, 2024

• forced libroadrunner version

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• using updated lock file

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