New features to support longer read 1

[alecw]

No description provided.

[codecov]

Codecov Report

Attention: Patch coverage is 71.82320% with 51 lines in your changes missing coverage. Please review.

Project coverage is 80.73%. Comparing base (bf3086b) to head (f5102e2).
Report is 5 commits behind head on master.

Files with missing lines	Patch %	Lines
.../readtrimming/TrimHomopolymerStartingSequence.java	65.85%	24 Missing and 4 partials ⚠️
...te/dropseqrna/readtrimming/AbstractTrimmerClp.java	65.00%	6 Missing and 1 partial ⚠️
...adinstitute/dropseqrna/readtrimming/ClipReads.java	85.36%	3 Missing and 3 partials ⚠️
...org/broadinstitute/dropseqrna/utils/BaseRange.java	0.00%	3 Missing and 2 partials ⚠️
...nstitute/dropseqrna/readtrimming/PolyATrimmer.java	77.77%	2 Missing and 2 partials ⚠️
.../dropseqrna/readtrimming/TrimStartingSequence.java	75.00%	0 Missing and 1 partial ⚠️

Additional details and impacted files

@@             Coverage Diff              @@
##             master     #485      +/-   ##
============================================
- Coverage     80.76%   80.73%   -0.04%     
- Complexity     4812     4849      +37     
============================================
  Files           363      366       +3     
  Lines         20514    20669     +155     
  Branches       3213     3245      +32     
============================================
+ Hits          16569    16687     +118     
- Misses         2641     2668      +27     
- Partials       1304     1314      +10     

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[jamesnemesh]

This looks good to me.