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Release 2.0#68

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AnsArn merged 152 commits intomastercryotools/cosipy:masterfrom release-2.0cryotools/cosipy:release-2.0Copy head branch name to clipboardNov 22, 2024

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Commits

Commits on Jun 1, 2021

• Latest (Bug fix for snowfall) version of wrf2cosipy.py

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• Fix jitclass spec for number_nodes

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• Create GRID in gitted call

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• Return fresh snow timestamps

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• Remove if statement for update_surface_temperature call

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• One liners for lyfe

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• Cast zero mass and melt energy fluxes to float not int

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• Cast zero mass fluxes to float part 2

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• Limit MO stability parameter for WRF_X_CSPY following NoahMP

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• New jitted version of Secant root finder (formerly known as Newton)

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• Use water density as a reference for converting from snow w.e. to depth

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• New treatment of small snowfall amounts

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Commits on Jun 3, 2021

• Hours_since_snowfall not used in cosipy_core

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Commits on Jun 17, 2021

• Restoring SLSQP as default TSFC method

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• Timestamp not used in cosipy_core

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• Reproducible shortening of init_snowpack

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• Rename minimum_snow_layer_height to minimum_layer_height

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• Remove more unused code from cosipy_core, revert print statement in densification

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• Raise ValueError when exceeding max_layers

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• New initial (quadratic) grid spacing in ice for adaptive remeshing

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Commits on Jul 5, 2021

• Bypass local array creation in cosipy core until more elegant solution is implemented

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• Bug fix for occasional oversaturation of first model level in correct_layer

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• Prevent small negative RAIN values

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• Updated adaptive remeshing (merge instead of remove small snow layers unless at snow-ice interface; merge small ice layers

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• Softer defaults for merging snow layers with adaptive remeshing; Comment clean up

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Commits on Aug 29, 2023

• Uodate that wrfxcsp work with newest packages, correct bug with saving results correctly

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Commits on Jan 25, 2024

• Update surfaceTemperature.py

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Commits on Feb 8, 2024

• fix(surfaceTemperature): deprecated conversion to float

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• fix(postprocess): deprecated date range frequency, dimension size

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Commits on Feb 12, 2024

• refactor(grid): duplicate methods when summing lists, string ops

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Commits on Feb 28, 2024

• Corrected and vectorised refreezing Module

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• Notes added to make checking easier

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Commits on Mar 6, 2024

• build!: map to src layout

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• fix(build): remap import paths to new src layout

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• feat(build): add pyproject.toml

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Commits on Mar 7, 2024

• feat(build)!: user can select .toml configuration file

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• refactor: create data output directories if missing

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Commits on Mar 8, 2024

• feat: configuration supports Slurm

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• feat(build): generate configuration files using entry point

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Commits on Mar 11, 2024

• feat(utilities)!: migrate utility configuration to .toml

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• refactor(build): rename entry points

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Commits on Mar 15, 2024

• feat(build)!: configure constants using .toml

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• feat(utilities): add toml configuration support for utilities

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Commits on Mar 18, 2024

• fix(utilities): select any configuration file for utilities

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• fix(build): remove requirement for sample configs

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• feat(build): add entry points for help, alias for running model

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Commits on Mar 19, 2024

• feat(build): users can convert existing .py config files into toml

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• fix(docs): incorrect reST in README

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• feat(build): aliases for setup

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• fix(build): missing __init__ files

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Commits on May 23, 2024

• feat: add benchmark script and profiling wrappers

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• Merge remote-tracking branch 'origin/fix-deprecation' into feat-pip-installation

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• merge: merge branch 'refactor-duplicate-code' into feat-optimisation

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• fix(tests): typo causes incorrect reference to Constants

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• merge: merge branch 'feat-pip-installation' into feat-optimisation

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Commits on May 24, 2024

• fix(tests): stop cosipy swallowing pytest arguments

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• merge: merge branch 'feat-pip-installation' into feat-optimisation

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Commits on May 31, 2024

• refactor(modules): minor optimisations for penetrating radiation

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• refactor(modules): optimise heat equation solver

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• refactor(io): loop over dict to initialise results

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• refactor: remove unused variables

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Commits on Jun 6, 2024

• fix(tests): change cartopy deprecation in _gridliners to Gridliner

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• tests: add tests for configuration hook

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• merge: merge branch 'feat-pip-installation' into feat-optimisation

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• docs: update compatibility matrix

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• merge: merge branch 'feat-pip-installation' into feat-optimisation

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Commits on Jun 10, 2024

• docs: update documentation

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Commits on Jun 11, 2024

• docs(fix): fixes recursive api generation, theme

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Commits on Jun 12, 2024

• fix(docs): fix broken docstrings

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Commits on Jun 18, 2024

• fix(refreezing): refreezing now conserves mass, units

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• feat: add entry points

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• refactor(utilities): update arguments for aws2cosipy

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• merge: merge branch 'feat-pip-installation' into feat-optimisation

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• merge: merge feat-pip-installation into feat-optimisation

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• merge: merge branch 'Bug_Fix_Refreezing_Option_B' into feat-optimisation

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• docs: include top-level files in API

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• Merge branch 'feat-documentation' into feat-optimisation

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• fix(tests): fix broken tests

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• refactor: remove redundant files

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• fix(docs): fix broken documentation

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Commits on Jun 19, 2024

• fix(docs): fix inconsistent units, errors, broken ReST

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• refactor(utilities): optimised aws2cosipy, fixed bug

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Commits on Jun 20, 2024

• fix(slurm): remove redundant module, fix default template

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• fix: TypeError when passing Slurm parameters, doc errors, hung tests

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• refactor: clean up main file

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• docs: simplify installation

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• feat(build): add CI workflow

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• merge: merge branch 'Bug_Fix_Surface_Temperature_Solver' into feat-optimisation

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Commits on Jun 21, 2024

• admin: prep release 2.0

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• fix(ci): add gdal dev headers to CI env

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• fix(ci): typo in requirement

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• fix(ci): remove eager upgrade strategy to allow gdal install

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Commits on Jun 24, 2024

• fix(ci): fix richdem install failing

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• fix(tests): tkagg causes matplotlib to fail ci

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• docs: update README badge

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• docs: fix incorrect target

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• docs: update CI badge

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Commits on Jul 4, 2024

• build(data): update input data and static file

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Commits on Jul 8, 2024

• merge: merge branch 'release-2.0' into wrfxcspy

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Commits on Jul 11, 2024

• refactor(modules): remove duplicate net shortwave calculation

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Commits on Jul 12, 2024

• refactor(cpkernel): regression in init_snowpack to match release branch

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Commits on Jul 16, 2024

• fix(cpkernel): replace bitwise with lazy evaluation, NaNs in SLOPE

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• fix: replace bitwise operator with lazy evaluation

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Commits on Aug 26, 2024

• Fix for inconsistent typing [float64 vs array(float64, 1d, C)] of H0 (actually T0)

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Commits on Sep 10, 2024

• initialize snow albedo with firn albedo

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• bug fix for WRF_X_CSPY data container not supporting isnull()

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Commits on Oct 4, 2024

• refactor: simplify array creation

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• merge: merge branch 'wrfxcspy' into release-2.0

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Commits on Oct 7, 2024

• merge: Merge branch 'wrfxcspy' into release-2.0

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Commits on Oct 14, 2024

• refactor (albedo): optimisations, duplicate code, docstrings

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• tests: update fixtures

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• refactor (cpkernel)!: IO optimisations

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Commits on Oct 15, 2024

• refactor(modules): densification optimisations, tests

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• refactor(rmse)!: optimisations in evaluation module

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• refactor(modules): optimisations, docs for roughness

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• refactor: optimisations, docs

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• Quick fix for local reference of dt

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Commits on Oct 21, 2024

• refactor: get_depth

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Commits on Oct 22, 2024

• refactor(cpkernel): optimise get_depth, avoid namespace collisions

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• refactor(surfaceTemperature): performance optimisation, docs

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• docs: update documentation and docstrings

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• refactor(radCor): optimise radiation module

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• merge: merge branch 'wrfxcspy' into release-2.0

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Commits on Oct 28, 2024

• docs: add and update old documentation, type hinting

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• refactor: remove unecessary import, clean up tests

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• refactor: remove minimisation override, update secant

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Commits on Oct 29, 2024

• fix: type error in minimisation, config files

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• fix(tests): fix incorrect type in tests

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Commits on Oct 30, 2024

• docs: clean up resources docs

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Commits on Oct 31, 2024

• build: update requirements

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• fix(CI): fix failed CI installation

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• fix(ci): workaround for richdem

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• build: finalise requirements

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• refactor(utilities)!: rework documentation, optimisations

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• docs: finalise documentation

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• docs: add recommendation for icc

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Commits on Nov 18, 2024

• fix!: regression solves dask OOM with SLURM

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• fix: incorrect date comparisons, array optimisations

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• refactor!: consistent user arguments, docs

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• fix(tests): update user argument test for field plots

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Commits on Nov 19, 2024

• refactor: remove redundant output files

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• merge: merge branch 'hotfix-dask-oom' into release-2.0

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• build: finalise PyPI details

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• fix(build): fix typo in dev dependencies

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Commits on Nov 21, 2024

• refactor: error handling

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• docs: detail output variable selection

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• fix: add fix for empty variable output

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• merge: merge branch 'hotfix-dask-oom' into release-2.0

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• fix(ci): outdated dependencies on github

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Commits on Nov 22, 2024

• fix(utilities): add output_variables to conversion

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• docs: final documentation update

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• admin: pypi workflow scripts, finalised pyproject.toml

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