MHC

Assortative Folder:

get_P folder:

all folder:

• getP3.py: Obtain assortative probability values for non-mhc overall population.

• getP3_mhc.ipynb:

  Obtain assortative probability values for mhc overall population.

races folder:

• getP4.py: Obtain assortative probability values for non-mhc distinct population.

• getP4_mhc.ipynb:

  Obtain assortative probability values for mhc distinct population.

get_Region folder:

all folder:

• find_region_p3.ipynb: Obtain assortative mating regions for overall population.

races folder:

• find_region_p4.ipynb: Obtain assortative mating regions for distinct population.

get_Rs folder:

• RS_MHC.py: Obtain RS values for the positions in MHC assortative mating regions.

• RS_NONMHC.ipynb: Obtain RS values for the positions in NON-MHC assortative mating regions.

Disassortative Folder:

get_P folder:

all folder:

• getP.py: Obtain disassortative probability values for non-mhc overall population.

• getP_mhc.ipynb:

  Obtain disassortative probability values for mhc overall population.

races folder:

• getP2.py: Obtain disassortative probability values for non-mhc distinct population.

• getP2_mhc.ipynb:

  Obtain disassortative probability values for mhc distinct population.

get_Region folder:

all folder:

• find_region_p1.ipynb: Obtain disassortative mating regions for overall population.

races folder:

• find_region_p2.ipynb: Obtain disassortative mating regions for distinct population.

get_Rs folder:

• RS_MHC.py: Obtain RS values for the positions in MHC disassortative mating regions.

• RS_NONMHC.ipynb: Obtain RS values for the positions in NON-MHC disassortative mating regions.

FIGURES Folder:

• FIGURE 1.ipynb: The code for FIGURE 1
• FIGURE 2.ipynb: The code for FIGURE 2
• FIGURE 3.ipynb: The code for FIGURE 3
• FIGURE 4.ipynb: The code for FIGURE 4
• FIGURE 6-1.ipynb: The code for FIGURE 6-1

FILES_CSV Folder:

• Table S1.ipynb: The code for Table S1

• Table S2.ipynb: The code for Table S2

• Table S3_part0.ipynb & Table S3_part1.ipynb: The code for Table S3

• Table S4.ipynb: The code for Table S4

• Table S5_part0.ipynb & Table S5_part1.ipynb: The code for Table S5

• Table S6.ipynb: The code for Table S6

• Table S7.ipynb: The code for Table S7

1000_population.tsv:

This file is about the categories of distinct population.

prepare_mhc_data.sh:

This file is used to prepare the data.