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v0.10.0

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@jamesli124 jamesli124 released this 19 Dec 03:13
· 102 commits to main since this release
942a3bd

Changed

  • several modules containing implementations of fragmentomic features or
    utility functions have been made internal. This means there is now only one
    obvious import for each function. For example, multi_wps is imported from
    finaletoolkit.frag, and no longer can be imported from
    finaletoolkit.frag.multi_wps
  • The CLI now uses lazy importing, drastically speeding up finaletoolkit when
    called from a command line.
  • Added negative_strand option for end-motifs related functions. When
    used in conjunction with both_strands, only end motifs on the negative
    (Crick) strand are considered in calculations.
  • Renamed fraction_high and fraction_low in utils.utils.frag_generator
    to min_length and max_length.

Fixed

  • deprecated arguments for end-motifs had default values which could
    lead to an error. This is fixed.