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Changed
several modules containing implementations of fragmentomic features or
utility functions have been made internal. This means there is now only one
obvious import for each function. For example, multi_wps is imported from finaletoolkit.frag, and no longer can be imported from finaletoolkit.frag.multi_wps
The CLI now uses lazy importing, drastically speeding up finaletoolkit when
called from a command line.
Added negative_strand option for end-motifs related functions. When
used in conjunction with both_strands, only end motifs on the negative
(Crick) strand are considered in calculations.
Renamed fraction_high and fraction_low in utils.utils.frag_generator
to min_length and max_length.
Fixed
deprecated arguments for end-motifs had default values which could
lead to an error. This is fixed.