Updating workflows/sars-cov-2-variant-calling/sars-cov-2-pe-illumina-…

…artic-variant-calling from 0.5.5 to 0.5.6
galaxyproject · Jul 15, 2024 · ce4c0f6 · ce4c0f6
1 parent 30b6770
commit ce4c0f6
Showing 1 changed file with 5 additions and 5 deletions.
diff --git a/...-cov-2-variant-calling/sars-cov-2-pe-illumina-artic-variant-calling/pe-artic-variation.ga b/...-cov-2-variant-calling/sars-cov-2-pe-illumina-artic-variant-calling/pe-artic-variation.ga
@@ -11,7 +11,7 @@
     "format-version": "0.1",
     "license": "MIT",
     "name": "COVID-19: variation analysis on ARTIC PE data",
-    "release": "0.5.5",
+    "release": "0.5.6",
     "steps": {
         "0": {
             "annotation": "Illumina reads from ARTIC assay with fastqsanger encoding",
@@ -786,7 +786,7 @@
         },
         "18": {
             "annotation": "",
-            "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/qualimap_bamqc/qualimap_bamqc/2.2.2d+galaxy3",
+            "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/qualimap_bamqc/qualimap_bamqc/2.3+galaxy0",
             "errors": null,
             "id": 18,
             "input_connections": {
@@ -813,15 +813,15 @@
                 "top": 772.0
             },
             "post_job_actions": {},
-            "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/qualimap_bamqc/qualimap_bamqc/2.2.2d+galaxy3",
+            "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/qualimap_bamqc/qualimap_bamqc/2.3+galaxy0",
             "tool_shed_repository": {
-                "changeset_revision": "19ece8afbaab",
+                "changeset_revision": "30a201c9c310",
                 "name": "qualimap_bamqc",
                 "owner": "iuc",
                 "tool_shed": "toolshed.g2.bx.psu.edu"
             },
             "tool_state": "{\"duplicate_skipping\": [\"0\"], \"input1\": {\"__class__\": \"ConnectedValue\"}, \"per_base_coverage\": false, \"plot_specific\": {\"n_bins\": \"400\", \"paint_chromosome_limits\": true, \"genome_gc_distr\": null, \"homopolymer_size\": \"3\"}, \"stats_regions\": {\"region_select\": \"all\", \"__current_case__\": 0}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
-            "tool_version": "2.2.2d+galaxy3",
+            "tool_version": "2.3+galaxy0",
             "type": "tool",
             "uuid": "e2c69f7d-e6fd-4c9a-bbfd-05b70e5b2129",
             "when": null,