Theory of single cell RNA seq

Here are sources to understand the different steps and the biases of single-cell analysis:

• Current best practices in single-cell RNA-seq analysis: a tutorial

• Orchestrating Single-Cell Analysis with Bioconductor

• Presentation of single-cell for biologists to initialize a project at Gustave Roussy (Github has trouble displaying the pdf correctly but you can download it, by clicking on the "Download" button)

• Presentation of single-cell to present differences between LogNormalization and SCTransform (in French) (Github has trouble displaying the pdf correctly but you can download it, by clicking on the "Download" button)