Resnet splits

config/resnet44.ini

@@ -1,14 +1,14 @@
 [info]
 experiment: ResNet default settings
-name: resnet44_89
+name: resnet44_09
 
 [dataset]
 pixels: 96
 n_classes: 2
 channels: 1
 subset: None
-filenames_train: /scratch-shared/vdgugten/data/cadOWN_0.5mm_96x96_xy_xz_yz/subset[0123456]/*/*.pkl.gz
-filenames_validation: /scratch-shared/vdgugten/data/cadOWN_0.5mm_96x06_xy_xz_yz/subset[7]/*/*.pkl.gz
+filenames_train: /scratch-shared/vdgugten/data/cadOWN_0.5mm_96x96_xy_xz_yz/subset[1234567]/*/*.pkl.gz
+filenames_validation: /scratch-shared/vdgugten/data/cadOWN_0.5mm_96x06_xy_xz_yz/subset[8]/*/*.pkl.gz
 data_folder: None ;not used
 
 [network]

scripts/resnet_scripts/resnet44_01.sh → scripts/resnet_scripts/resnet44_09.sh

@@ -13,9 +13,8 @@ module load cudnn
 #Go to project folder
 cd $HOME/luna16/src/deep
 
-
 #Go!!!
 
 echo "starting python"
-export THEANO_FLAGS='mode=FAST_RUN,device=gpu,floatX=float32,lib.cnmem=1' 
-srun -u python train.py ../../config/default_fr3dnet.ini
+export THEANO_FLAGS='mode=FAST_RUN,device=gpu,floatX=float32,lib.cnmem=1'
+srun -u python train.py ../../config/resnet44_09.ini

scripts/resnet_scripts/resnet44_12.sh

@@ -0,0 +1,20 @@
+#!/bin/bash
+#SBATCH -t 2-00:00:00
+#SBATCH -p gpu
+#SBATCH -c 12
+
+#Prepare python environment
+export PYTHONPATH=$HOME/pythonpackages/lib/python:$PYTHONPATH
+export PYTHONPATH=$HOME/pythonpackages/lib/python2.7/site-packages:$PYTHONPATH
+module load python/2.7.9
+module load cuda
+module load cudnn
+
+#Go to project folder
+cd $HOME/luna16/src/deep
+
+#Go!!!
+
+echo "starting python"
+export THEANO_FLAGS='mode=FAST_RUN,device=gpu,floatX=float32,lib.cnmem=1'
+srun -u python train.py ../../config/resnet44_12.ini

scripts/resnet_scripts/resnet44_34.sh

@@ -0,0 +1,20 @@
+#!/bin/bash
+#SBATCH -t 2-00:00:00
+#SBATCH -p gpu
+#SBATCH -c 12
+
+#Prepare python environment
+export PYTHONPATH=$HOME/pythonpackages/lib/python:$PYTHONPATH
+export PYTHONPATH=$HOME/pythonpackages/lib/python2.7/site-packages:$PYTHONPATH
+module load python/2.7.9
+module load cuda
+module load cudnn
+
+#Go to project folder
+cd $HOME/luna16/src/deep
+
+#Go!!!
+
+echo "starting python"
+export THEANO_FLAGS='mode=FAST_RUN,device=gpu,floatX=float32,lib.cnmem=1'
+srun -u python train.py ../../config/resnet44_34.ini

scripts/resnet_scripts/resnet44_56.sh

@@ -0,0 +1,20 @@
+#!/bin/bash
+#SBATCH -t 2-00:00:00
+#SBATCH -p gpu
+#SBATCH -c 12
+
+#Prepare python environment
+export PYTHONPATH=$HOME/pythonpackages/lib/python:$PYTHONPATH
+export PYTHONPATH=$HOME/pythonpackages/lib/python2.7/site-packages:$PYTHONPATH
+module load python/2.7.9
+module load cuda
+module load cudnn
+
+#Go to project folder
+cd $HOME/luna16/src/deep
+
+#Go!!!
+
+echo "starting python"
+export THEANO_FLAGS='mode=FAST_RUN,device=gpu,floatX=float32,lib.cnmem=1'
+srun -u python train.py ../../config/resnet44_56.ini

scripts/resnet_scripts/resnet44_78.sh

@@ -0,0 +1,20 @@
+#!/bin/bash
+#SBATCH -t 2-00:00:00
+#SBATCH -p gpu
+#SBATCH -c 12
+
+#Prepare python environment
+export PYTHONPATH=$HOME/pythonpackages/lib/python:$PYTHONPATH
+export PYTHONPATH=$HOME/pythonpackages/lib/python2.7/site-packages:$PYTHONPATH
+module load python/2.7.9
+module load cuda
+module load cudnn
+
+#Go to project folder
+cd $HOME/luna16/src/deep
+
+#Go!!!
+
+echo "starting python"
+export THEANO_FLAGS='mode=FAST_RUN,device=gpu,floatX=float32,lib.cnmem=1'
+srun -u python train.py ../../config/resnet44_78.ini