Code

Use Component & Physics syntax#139

Code

Open

GiudGiud wants to merge 65 commits intoidaholab:develidaholab/TMAP8:develfrom GiudGiud:PR_new_componentsGiudGiud/TMAP8:PR_new_componentsCopy head branch name to clipboard

+3,362-150

Commits

Commits on Feb 14, 2025

• Create Enclosure and Structure components

  Show description for fd0ab1f
  

  lindsayad

  authored and

  GiudGiud

  committed
  fd0ab1f

  Copy full SHA for fd0ab1f

• Remove flow components since this hasnt been done yet

  GiudGiud

  committed
  a202550

  Copy full SHA for a202550

• Rework 0D enclosure to leverage Physics system: lets a SpeciesTrappingPhysics live there

  Show description for fffe239
  GiudGiud

  committed
  fffe239

  Copy full SHA for fffe239

• Add an option for a function temperature in equilibrium BC

  Show description for 441ac11
  GiudGiud

  committed
  441ac11

  Copy full SHA for 441ac11

• Add a Physics for trapping an arbitrary number of species on an enclosure

  Show description for 11a22e4
  GiudGiud

  committed
  11a22e4

  Copy full SHA for 11a22e4

• Adapt shared parameters to definition of components

  GiudGiud

  committed
  3500715

  Copy full SHA for 3500715

• Remove functional enclosure, nothing more than enclosure

  GiudGiud

  committed
  c038b32

  Copy full SHA for c038b32

• Clean up ver-1a a bit

  GiudGiud

  committed
  16ddb25

  Copy full SHA for 16ddb25

• Add a component version of ver-1a

  Show description for 57659b9
  GiudGiud

  committed
  57659b9

  Copy full SHA for 57659b9

• Add a component-physics version of ver1b

  Show description for ae62dc6
  GiudGiud

  committed
  ae62dc6

  Copy full SHA for ae62dc6

• Format input files

  GiudGiud

  committed
  6cdb98f

  Copy full SHA for 6cdb98f

• Fixup 1D structure for physics interaction

  GiudGiud

  committed
  c55da1b

  Copy full SHA for c55da1b

• reduce number of parameters on 1D structure

  GiudGiud

  committed
  2dc5a95

  Copy full SHA for 2dc5a95

• Change sign on flux

  GiudGiud

  committed
  9bfdbed

  Copy full SHA for 9bfdbed

• Fixup ver1a component test

  GiudGiud

  committed
  9af3939

  Copy full SHA for 9af3939

• Remove scaling error on surface area

  Show description for 531c439
  GiudGiud

  committed
  531c439

  Copy full SHA for 531c439

• Add a component-physics version of ver1c

  GiudGiud

  committed
  36d2498

  Copy full SHA for 36d2498

• Remove function, PPs since unused

  GiudGiud

  committed
  c288c1d

  Copy full SHA for c288c1d

• Re-order species trapping into 0D and field physics

  GiudGiud

  committed
  b43858f

  Copy full SHA for b43858f

• Move enclosure physics to PointTrappingPhysics

  GiudGiud

  committed
  77c3b9c

  Copy full SHA for 77c3b9c

• Add a nodal (field) physics for trapping in a multiD component

  GiudGiud

  committed
  d6aab62

  Copy full SHA for d6aab62

• New syntax idea for organizing trapping physics

  GiudGiud

  committed
  a2cc58c

  Copy full SHA for a2cc58c

• Remove initialization of physics from component

  GiudGiud

  committed
  6043a99

  Copy full SHA for 6043a99

• Add release term in mobile equation from trapped physics

  GiudGiud

  committed
  688157a

  Copy full SHA for 688157a

• Add a component-physics version of ver1d

  GiudGiud

  committed
  fb64929

  Copy full SHA for fb64929

• Use functors for component temperatures in physics and accomodate for nodal release term using a variable

  GiudGiud

  committed
  510e784

  Copy full SHA for 510e784

• Add a component physics version of ver 1e

  Show description for 74767d3
  GiudGiud

  committed
  74767d3

  Copy full SHA for 74767d3

• Add a component physics version of ver 1fa

  Show description for 7019d88
  GiudGiud

  committed
  7019d88

  Copy full SHA for 7019d88

• Add a component physics version of ver 1fb

  Show description for 35e9067
  GiudGiud

  committed
  35e9067

  Copy full SHA for 35e9067

• Add a component physics version of ver 1fc

  Show description for 8fa53ff
  GiudGiud

  committed
  8fa53ff

  Copy full SHA for 8fa53ff

• Add a component physics version of ver 1fd

  Show description for 8e6406f
  GiudGiud

  committed
  8e6406f

  Copy full SHA for 8e6406f

• Add a migration physics to also handle the reaction term

  Show description for 4738332
  GiudGiud

  committed
  4738332

  Copy full SHA for 4738332

• Add a test

  GiudGiud

  committed
  d1372a4

  Copy full SHA for d1372a4

• Pick a name for the physics

  GiudGiud

  committed
  8f0773a

  Copy full SHA for 8f0773a

• Clean up physics and components tests to make them all match defaults

  GiudGiud

  committed
  e752995

  Copy full SHA for e752995

• Parameter adjustments for trapping physics

  GiudGiud

  committed
  bf9b5df

  Copy full SHA for bf9b5df

• Adapt to ComponentAction -> ActionComponent rename

  GiudGiud

  committed
  81f06d7

  Copy full SHA for 81f06d7

• Adapt to code changes in Physics base classes

  Show description for ea708be
  GiudGiud

  committed
  ea708be

  Copy full SHA for ea708be

• Adapt verification cases to new component syntax

  GiudGiud

  committed
  508da35

  Copy full SHA for 508da35

• Address test failures:

  Show description for fae0052
  GiudGiud

  committed
  fae0052

  Copy full SHA for fae0052

• Add source and syntax documentation pages for new Physics

  GiudGiud

  committed
  117358b

  Copy full SHA for 117358b

• Add more comments, more TODOs, improve parameters (make required) for various Physics

  GiudGiud

  committed
  0b9ee47

  Copy full SHA for 0b9ee47

• Save variable names for exodus restart purposes

  Show description for aa0a081
  GiudGiud

  committed
  aa0a081

  Copy full SHA for aa0a081

• Add block restriction and solver system to field trapping vars

  GiudGiud

  committed
  e28f5f6

  Copy full SHA for e28f5f6

• Add shorter syntax for MOOSE Physics used by TMAP8

  GiudGiud

  committed
  00557bb

  Copy full SHA for 00557bb

Commits on Feb 15, 2025

• Add documentation for the ActionComponents, with the desired interaction with Physics

  GiudGiud

  committed
  761f399

  Copy full SHA for 761f399

• Modify inputs to show new physics syntax

  GiudGiud

  committed
  1ac05a4

  Copy full SHA for 1ac05a4

• Use the new MOOSE component helpers/interfaces in TMAP8 components

  GiudGiud

  committed
  fc19b00

  Copy full SHA for fc19b00

• Add functor property options to EquilibriumBC

  GiudGiud

  committed
  fb7ea44

  Copy full SHA for fb7ea44

• Use functor properties for equilibriumBC in PointTrappingPhysics

  GiudGiud

  committed
  eb4c4e0

  Copy full SHA for eb4c4e0

• Add missing tasks to components

  Show description for f5a30d0
  GiudGiud

  committed
  f5a30d0

  Copy full SHA for f5a30d0

• Adapt input files to short physics names

  Show description for dc6a653
  GiudGiud

  committed
  dc6a653

  Copy full SHA for dc6a653

• Rename MultiSpeciesMigrationCG Physics to SpeciesDiffusionReactionCG

  Show description for 11a9d22
  GiudGiud

  committed
  11a9d22

  Copy full SHA for 11a9d22

• Rename PointTrappingPhysics to SpeciesSolubilityPhysics

  Show description for 22e7543
  GiudGiud

  committed
  22e7543

  Copy full SHA for 22e7543

• Rename FieldTrappingPhysics to SpeciesTrappingPhysics

  GiudGiud

  committed
  2b39309

  Copy full SHA for 2b39309

• Move equilibrium constants to enclosure

  GiudGiud

  committed
  eca26d9

  Copy full SHA for eca26d9

• Use the TMAP8 header

  GiudGiud

  committed
  19e2013

  Copy full SHA for 19e2013

Commits on Feb 17, 2025

• Use csvdiff for ver-1a component version

  GiudGiud

  committed
  53da0c8

  Copy full SHA for 53da0c8

• Rename FieldTrapping to SpeciesTrapping Physics

  GiudGiud

  committed
  8cbd848

  Copy full SHA for 8cbd848

• Add size checks on physics params

  GiudGiud

  committed
  d3e6dda

  Copy full SHA for d3e6dda

• fixup! Use csvdiff for ver-1a component version

  GiudGiud

  committed
  6f3b09a

  Copy full SHA for 6f3b09a

• Fix block restrictions to use components when known

  GiudGiud

  committed
  9f6ee01

  Copy full SHA for 9f6ee01

• fixup! Add size checks on physics params

  GiudGiud

  committed
  17e37ad

  Copy full SHA for 17e37ad

Commits on Feb 21, 2025

• Add capability to load various matprops from components

  GiudGiud

  committed
  d61020d

  Copy full SHA for d61020d

• Rename the SpeciesSolubility to sorption exchange

  GiudGiud

  committed
  c735b55

  Copy full SHA for c735b55