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<h1>Source code for gpsea.analysis.predicate.genotype._counter</h1><div class="highlight"><pre>
<h1>Source code for gpsea.analysis.clf._counter</h1><div class="highlight"><pre>
<span></span><span class="kn">from</span> <span class="nn">gpsea.model</span> <span class="kn">import</span> <span class="n">Patient</span><span class="p">,</span> <span class="n">Genotype</span>
<span class="kn">from</span> <span class="nn">._api</span> <span class="kn">import</span> <span class="n">VariantPredicate</span>

<span class="kn">from</span> <span class="nn">..predicate</span> <span class="kn">import</span> <span class="n">VariantPredicate</span>


<div class="viewcode-block" id="AlleleCounter">
<a class="viewcode-back" href="../../../../../apidocs/gpsea.analysis.predicate.genotype.html#gpsea.analysis.predicate.genotype.AlleleCounter">[docs]</a>
<a class="viewcode-back" href="../../../../apidocs/gpsea.analysis.clf.html#gpsea.analysis.clf.AlleleCounter">[docs]</a>
<span class="k">class</span> <span class="nc">AlleleCounter</span><span class="p">:</span>
<span class="w"> </span><span class="sd">&quot;&quot;&quot;</span>
<span class="sd"> `AlleleCounter` counts the number of alleles of all variants that pass the selection with a given `predicate`.</span>
Expand All @@ -99,7 +100,7 @@ <h1>Source code for gpsea.analysis.predicate.genotype._counter</h1><div class="h
<span class="bp">self</span><span class="o">.</span><span class="n">_predicate</span> <span class="o">=</span> <span class="n">predicate</span>

<div class="viewcode-block" id="AlleleCounter.get_question">
<a class="viewcode-back" href="../../../../../apidocs/gpsea.analysis.predicate.genotype.html#gpsea.analysis.predicate.genotype.AlleleCounter.get_question">[docs]</a>
<a class="viewcode-back" href="../../../../apidocs/gpsea.analysis.clf.html#gpsea.analysis.clf.AlleleCounter.get_question">[docs]</a>
<span class="k">def</span> <span class="nf">get_question</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
<span class="w"> </span><span class="sd">&quot;&quot;&quot;</span>
<span class="sd"> Get the question tested by the predicate.</span>
Expand All @@ -111,7 +112,7 @@ <h1>Source code for gpsea.analysis.predicate.genotype._counter</h1><div class="h


<div class="viewcode-block" id="AlleleCounter.count">
<a class="viewcode-back" href="../../../../../apidocs/gpsea.analysis.predicate.genotype.html#gpsea.analysis.predicate.genotype.AlleleCounter.count">[docs]</a>
<a class="viewcode-back" href="../../../../apidocs/gpsea.analysis.clf.html#gpsea.analysis.clf.AlleleCounter.count">[docs]</a>
<span class="k">def</span> <span class="nf">count</span><span class="p">(</span>
<span class="bp">self</span><span class="p">,</span>
<span class="n">patient</span><span class="p">:</span> <span class="n">Patient</span><span class="p">,</span>
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