merge classic Hodgkin lymphoma, nodular sclerosis type (#7646)

* merge classic Hodgkin lymphoma, nodular sclerosis type close #7278 * fix source
monarch-initiative · May 1, 2024 · 6fc0d14 · 6fc0d14
1 parent 7942133
commit 6fc0d14
Showing 1 changed file with 16 additions and 21 deletions.
diff --git a/src/ontology/mondo-edit.obo b/src/ontology/mondo-edit.obo
@@ -82859,7 +82859,11 @@ is_a: MONDO:0005135 {source="DOID:883", source="EFO:1001342", source="MESH:D0063
 id: MONDO:0004665
 name: nodular sclerosis classical Hodgkin lymphoma
 def: "A subtype of classical Hodgkin lymphoma characterized by collagen bands that surround at least one nodule, and Hodgkin and Reed-Sternberg cells with lacunar type morphology. (WHO, 2008)" [NCIT:C3518]
+subset: gard_rare {source="GARD:19591"}
 subset: inferred_rare
+subset: nord_rare {source="MONDO:NORD"}
+subset: ordo_histopathological_subtype {source="Orphanet:98843"}
+subset: orphanet_rare {source="Orphanet:98843"}
 subset: otar {source="MONDO:OTAR"}
 subset: rare
 synonym: "classical Hodgkin lymphoma, nodular sclerosis" EXACT [DOID:8838]
@@ -82881,19 +82885,23 @@ synonym: "NSHD" EXACT ABBREVIATION [NCIT:C3518]
 synonym: "NSHL" EXACT ABBREVIATION [DOID:8838, NCIT:C3518]
 xref: DOID:8838 {source="MONDO:equivalentTo"}
 xref: EFO:0004708 {source="MONDO:equivalentTo", source="MONDO:EFO"}
-xref: ICD10CM:C81.1 {source="DOID:8838"}
+xref: GARD:19591 {source="Orphanet:98843"}
+xref: ICD10CM:C81.1 {source="Orphanet:98843", source="DOID:8838", source="Orphanet:98843/e"}
+xref: icd11.foundation:1995941600 {source="Orphanet:98843", source="MONDO:equivalentTo", source="https://orcid.org/0000-0001-5208-3432"}
 xref: ICD9:201.5 {source="DOID:8838"}
 xref: ICDO:9663/3 {source="NCIT:C3518"}
 xref: NCIT:C3518 {source="MONDO:equivalentTo", source="DOID:8838", source="EFO:0004708"}
 xref: ONCOTREE:NSCHL {source="MONDO:equivalentTo"}
+xref: Orphanet:98843 {source="MONDO:equivalentTo"}
 xref: SCTID:118608000 {source="MONDO:equivalentTo", source="DOID:8838"}
 xref: SCTID:134178004 {source="DOID:8838"}
 xref: SCTID:188564003 {source="DOID:8838"}
 xref: SCTID:188573006 {source="DOID:8838"}
 xref: SCTID:52248008 {source="DOID:8838"}
-xref: UMLS:C0152268 {source="NCIT:C3518", source="MONDO:notFoundInDiseaseSubset", source="DOID:8838"}
+xref: UMLS:C0152268 {source="NCIT:C3518", source="Orphanet:98843", source="MONDO:notFoundInDiseaseSubset", source="DOID:8838"}
 is_a: MONDO:0004952 {source="DOID:8838", source="EFO:0004708", source="MONDO:0004665/inferred", source="NCIT:C3518/inferred", source="ONCOTREE:NSCHL/inferred"} ! Hodgkins lymphoma
-is_a: MONDO:0009348 {source="NCIT:C3518", source="ONCOTREE:NSCHL"} ! classic Hodgkin lymphoma
+is_a: MONDO:0009348 {source="NCIT:C3518", source="ONCOTREE:NSCHL", source="Orphanet:98843"} ! classic Hodgkin lymphoma
+property_value: IAO:0000233 "https://github.com/monarch-initiative/mondo/issues/7278" xsd:anyURI
 
 [Term]
 id: MONDO:0004666
@@ -139209,7 +139217,6 @@ xref: UMLS:C0079153 {source="Orphanet:312", source="MONDO:ncbi_mim2gene_medline"
 xref: UMLS:C1862005 {source="MONDO:notFoundInDiseaseSubset", source="OMIM:113800"}
 is_a: MONDO:0003847 {source="OMIMPS:113800"} ! hereditary disease
 is_a: MONDO:0017266 {source="Orphanet:281103", source="Orphanet:312", source="https://orcid.org/0000-0002-4142-7153"} ! keratinopathic ichthyosis
-is_a: MONDO:0017266 {source="Orphanet:312"} ! keratinopathic ichthyosis
 is_a: MONDO:0045011 {source="OMIMPS:113800"} ! keratinization disease
 relationship: has_characteristic MONDO:0021152 {source="OMIMPS:113800"} ! inherited
 property_value: IAO:0000233 "https://github.com/monarch-initiative/mondo/issues/7238" xsd:anyURI
@@ -440401,22 +440408,11 @@ property_value: seeAlso "https://rarediseases.info.nih.gov/diseases/6944/lymphom
 
 [Term]
 id: MONDO:0020327
-name: classic Hodgkin lymphoma, nodular sclerosis type
-comment: Reason: duplicate. This will be merged with MONDO:0004665 nodular sclerosis classical Hodgkin lymphoma
-subset: gard_rare {source="GARD:19591"}
-subset: nord_rare {source="MONDO:NORD"}
-subset: obsoletion_candidate
-subset: ordo_histopathological_subtype {source="Orphanet:98843"}
-subset: orphanet_rare {source="Orphanet:98843"}
-subset: rare
-xref: GARD:19591 {source="Orphanet:98843"}
-xref: ICD10CM:C81.1 {source="Orphanet:98843", source="Orphanet:98843/e"}
-xref: icd11.foundation:1995941600 {source="Orphanet:98843", source="MONDO:equivalentTo", source="https://orcid.org/0000-0001-5208-3432"}
-xref: Orphanet:98843 {source="MONDO:equivalentTo"}
-xref: UMLS:C0152268 {source="Orphanet:98843", source="MONDO:notFoundInDiseaseSubset"}
-is_a: MONDO:0009348 {source="Orphanet:98843"} ! classic Hodgkin lymphoma
+name: obsolete classic Hodgkin lymphoma, nodular sclerosis type
+property_value: IAO:0000231 MONDO:TermsMerged
 property_value: IAO:0000233 "https://github.com/monarch-initiative/mondo/issues/7278" xsd:anyURI
-property_value: IAO:0006012 "2024-05-01" xsd:string
+is_obsolete: true
+replaced_by: MONDO:0004665
 
 [Term]
 id: MONDO:0020328
@@ -533080,8 +533076,7 @@ is_a: MONDO:0100546 {source="https://orcid.org/0000-0002-4142-7153|OMIM:620775"}
 id: MONDO:0958333
 name: thrombocytopenia 13, syndromic
 xref: OMIM:620776 {source="MONDO:equivalentTo"}
-is_a: MONDO:0100241 {source="https://orcid.org/0000-0002-4142-7153|OMIM:620776"} ! inherited thrombocytopenia
-is_a: MONDO:0100241 {source="OMIM:620776"} ! inherited thrombocytopenia
+is_a: MONDO:0100241 {source="OMIM:620776", source="https://orcid.org/0000-0002-4142-7153"} ! inherited thrombocytopenia
 
 [Term]
 id: MONDO:0958334